Variant report

Variant	rs7180507
Chromosome Location	chr15:59832545-59832546
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10851661	1.00[AMR][1000 genomes]
rs10851662	1.00[AMR][1000 genomes]
rs10851663	1.00[AMR][1000 genomes]
rs11071463	1.00[AMR][1000 genomes]
rs11071464	1.00[AMR][1000 genomes]
rs12101518	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12101627	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16941555	1.00[AMR][1000 genomes]
rs1871498	1.00[AMR][1000 genomes]
rs2307274	1.00[AMR][1000 genomes]
rs4775196	1.00[AMR][1000 genomes]
rs59773453	1.00[AMR][1000 genomes]
rs6151476	1.00[AMR][1000 genomes]
rs6151537	1.00[AMR][1000 genomes]
rs6151550	1.00[AMR][1000 genomes]
rs6151587	1.00[AMR][1000 genomes]
rs6494134	1.00[AMR][1000 genomes]
rs7162788	1.00[AMR][1000 genomes]
rs7180620	1.00[AMR][1000 genomes]
rs74019651	1.00[AMR][1000 genomes]
rs8039996	1.00[AMR][1000 genomes]
rs8041511	1.00[AMR][1000 genomes]
rs9806322	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv904279	chr15:59791666-59842927	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	esv3355345	chr15:59830485-59833033	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
6	esv3449066	chr15:59830685-59833083	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
7	esv3372381	chr15:59831110-59832658	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59827800-59835600	Weak transcription	Colonic Mucosa	Colon
2	chr15:59828200-59832600	Weak transcription	Fetal Intestine Small	intestine
3	chr15:59828800-59832600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr15:59830000-59832600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr15:59830000-59832800	Weak transcription	Stomach Mucosa	stomach
6	chr15:59831000-59835400	Weak transcription	Primary B cells from peripheral blood	blood
7	chr15:59832000-59834000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr15:59832200-59833200	Enhancers	A549	lung
9	chr15:59832200-59833200	Enhancers	K562	blood
10	chr15:59832200-59833400	Enhancers	Hela-S3	cervix
11	chr15:59832200-59833800	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr15:59832200-59834200	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr15:59832400-59832600	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr15:59832400-59833000	Enhancers	Duodenum Mucosa	Duodenum
15	chr15:59832400-59833000	Enhancers	GM12878-XiMat	blood

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