Variant report

Variant	rs10851662
Chromosome Location	chr15:59944010-59944011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59941827..59945958-chr15:59947356..59950499,4	MCF-7	breast:
2	chr15:59943848..59945800-chr15:59947913..59950330,3	MCF-7	breast:
3	chr15:59932328..59933962-chr15:59943086..59945341,2	K562	blood:
4	chr15:59942263..59944569-chr15:59959864..59962554,2	K562	blood:

Variant related genes	Relation type
ENSG00000140299	Chromatin interaction
ENSG00000140307	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10851661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10851663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11071463	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11071464	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12101518	1.00[AMR][1000 genomes]
rs12101627	1.00[AMR][1000 genomes]
rs16941555	1.00[AMR][1000 genomes]
rs16941810	1.00[AMR][1000 genomes]
rs1871498	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2307274	1.00[AMR][1000 genomes]
rs4775196	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6151431	1.00[AMR][1000 genomes]
rs6151435	1.00[AMR][1000 genomes]
rs6151476	1.00[AMR][1000 genomes]
rs6151537	1.00[AMR][1000 genomes]
rs6151550	1.00[AMR][1000 genomes]
rs6151587	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6494134	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7162788	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7180507	1.00[AMR][1000 genomes]
rs7180620	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74019651	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8039996	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8041511	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9806322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv569605	chr15:59855226-59956553	Strong transcription Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv533240	chr15:59858093-59998176	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	esv1824522	chr15:59919844-59987181	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59905200-59946200	Weak transcription	Gastric	stomach
2	chr15:59920600-59947000	Weak transcription	Small Intestine	intestine
3	chr15:59925600-59948600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:59926600-59947600	Weak transcription	Right Ventricle	heart
5	chr15:59926600-59948000	Weak transcription	Brain Angular Gyrus	brain
6	chr15:59927200-59948800	Weak transcription	Aorta	Aorta
7	chr15:59928400-59945600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr15:59929000-59947200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:59929200-59947600	Weak transcription	Ovary	ovary
10	chr15:59929600-59945800	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr15:59929800-59946400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr15:59930600-59948200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr15:59932800-59947800	Weak transcription	Colonic Mucosa	Colon
14	chr15:59932800-59948000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr15:59935600-59944200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:59935800-59944200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:59935800-59945000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr15:59936000-59944200	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr15:59936000-59945600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:59936000-59946000	Strong transcription	Primary B cells from peripheral blood	blood
21	chr15:59936000-59948000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr15:59936200-59946600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr15:59936400-59946800	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr15:59936400-59946800	Strong transcription	Duodenum Mucosa	Duodenum
25	chr15:59936400-59947000	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr15:59936600-59945000	Strong transcription	NHDF-Ad	bronchial
27	chr15:59936600-59945200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr15:59936600-59945800	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr15:59936600-59946800	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr15:59936600-59946800	Strong transcription	Dnd41	blood
31	chr15:59936600-59947000	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr15:59937000-59946200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr15:59937400-59947600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr15:59937600-59946600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:59938200-59946400	Weak transcription	Pancreas	Pancrea
36	chr15:59938200-59947600	Weak transcription	Spleen	Spleen
37	chr15:59938200-59947800	Weak transcription	NHLF	lung
38	chr15:59938200-59948800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr15:59938600-59949200	Weak transcription	Lung	lung
40	chr15:59938800-59947400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr15:59939000-59944800	Strong transcription	GM12878-XiMat	blood
42	chr15:59939400-59946600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr15:59939600-59945200	Weak transcription	Esophagus	oesophagus
44	chr15:59939800-59946000	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr15:59939800-59946200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr15:59940000-59945400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr15:59940800-59945000	Strong transcription	HMEC	breast
48	chr15:59941000-59944600	Strong transcription	Osteobl	bone
49	chr15:59941000-59945000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr15:59941000-59946800	Strong transcription	Stomach Smooth Muscle	stomach

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