Variant report

Variant	rs74019651
Chromosome Location	chr15:59937509-59937510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59934768..59938897-chr15:59945804..59950909,4	K562	blood:

Variant related genes	Relation type
ENSG00000140307	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10851661	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10851662	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10851663	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11071463	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11071464	1.00[AMR][1000 genomes]
rs12101518	1.00[AMR][1000 genomes]
rs12101627	1.00[AMR][1000 genomes]
rs16941555	1.00[AMR][1000 genomes]
rs1871498	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2307274	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4775196	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6151431	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6151435	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6151476	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6151537	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6151550	1.00[AMR][1000 genomes]
rs6151587	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6494134	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7162788	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7180507	1.00[AMR][1000 genomes]
rs7180620	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8039996	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8041511	1.00[AMR][1000 genomes]
rs9806322	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv569605	chr15:59855226-59956553	Strong transcription Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv533240	chr15:59858093-59998176	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	esv1824522	chr15:59919844-59987181	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59905200-59946200	Weak transcription	Gastric	stomach
2	chr15:59914800-59937800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:59920600-59947000	Weak transcription	Small Intestine	intestine
4	chr15:59925000-59943800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:59925600-59937800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr15:59925600-59948600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:59925800-59943800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr15:59926600-59944000	Weak transcription	Fetal Kidney	kidney
9	chr15:59926600-59947600	Weak transcription	Right Ventricle	heart
10	chr15:59926600-59948000	Weak transcription	Brain Angular Gyrus	brain
11	chr15:59927200-59948800	Weak transcription	Aorta	Aorta
12	chr15:59927400-59943800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:59927800-59942800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr15:59928400-59940200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:59928400-59945600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:59928800-59942000	Weak transcription	Fetal Heart	heart
17	chr15:59929000-59942200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr15:59929000-59944000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:59929000-59947200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr15:59929200-59941400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr15:59929200-59947600	Weak transcription	Ovary	ovary
22	chr15:59929600-59942400	Weak transcription	Colon Smooth Muscle	Colon
23	chr15:59929600-59945800	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr15:59929800-59940200	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr15:59929800-59946400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr15:59930000-59937800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr15:59930600-59939200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr15:59930600-59948200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr15:59931000-59941600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr15:59931200-59937800	Weak transcription	Psoas Muscle	Psoas
31	chr15:59931200-59941000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr15:59932200-59937800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr15:59932800-59947800	Weak transcription	Colonic Mucosa	Colon
34	chr15:59932800-59948000	Weak transcription	Rectal Smooth Muscle	rectum
35	chr15:59934400-59941600	Weak transcription	HUVEC	blood vessel
36	chr15:59934400-59942400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr15:59935200-59943600	Weak transcription	Stomach Mucosa	stomach
38	chr15:59935600-59941200	Strong transcription	Fetal Stomach	stomach
39	chr15:59935600-59944200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr15:59935800-59938200	Strong transcription	Fetal Intestine Large	intestine
41	chr15:59935800-59938200	Strong transcription	Fetal Muscle Trunk	muscle
42	chr15:59935800-59938200	Strong transcription	GM12878-XiMat	blood
43	chr15:59935800-59944200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr15:59935800-59945000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr15:59936000-59938200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr15:59936000-59939800	Strong transcription	Placenta	Placenta
47	chr15:59936000-59940000	Strong transcription	Fetal Brain Female	brain
48	chr15:59936000-59944200	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr15:59936000-59945600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr15:59936000-59946000	Strong transcription	Primary B cells from peripheral blood	blood

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