Variant report

Variant	rs11071464
Chromosome Location	chr15:59936634-59936635
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59934768..59938897-chr15:59945804..59950909,4	K562	blood:

Variant related genes	Relation type
ENSG00000140307	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10851661	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10851662	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10851663	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11071463	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12101518	1.00[AMR][1000 genomes]
rs12101627	1.00[AMR][1000 genomes]
rs16941555	1.00[AMR][1000 genomes]
rs1871498	0.92[ASW][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2307274	0.81[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4775196	0.92[ASW][hapmap];0.93[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6151431	1.00[AMR][1000 genomes]
rs6151435	1.00[AMR][1000 genomes]
rs6151476	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6151537	1.00[AMR][1000 genomes]
rs6151550	1.00[AMR][1000 genomes]
rs6151587	0.92[ASW][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6494134	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7162788	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7180507	1.00[AMR][1000 genomes]
rs7180620	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74019651	1.00[AMR][1000 genomes]
rs8039996	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8041511	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9806322	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv569605	chr15:59855226-59956553	Strong transcription Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv533240	chr15:59858093-59998176	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	esv1824522	chr15:59919844-59987181	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59905200-59946200	Weak transcription	Gastric	stomach
2	chr15:59914800-59937800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:59920600-59947000	Weak transcription	Small Intestine	intestine
4	chr15:59925000-59936800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:59925000-59936800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:59925000-59943800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:59925400-59937200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr15:59925600-59937800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:59925600-59948600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr15:59925800-59943800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:59926200-59936800	Weak transcription	Fetal Brain Male	brain
12	chr15:59926200-59937000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr15:59926600-59944000	Weak transcription	Fetal Kidney	kidney
14	chr15:59926600-59947600	Weak transcription	Right Ventricle	heart
15	chr15:59926600-59948000	Weak transcription	Brain Angular Gyrus	brain
16	chr15:59927000-59937000	Weak transcription	Lung	lung
17	chr15:59927200-59948800	Weak transcription	Aorta	Aorta
18	chr15:59927400-59943800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:59927800-59942800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:59928400-59940200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr15:59928400-59945600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr15:59928800-59937400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr15:59928800-59942000	Weak transcription	Fetal Heart	heart
24	chr15:59929000-59936800	Weak transcription	Esophagus	oesophagus
25	chr15:59929000-59942200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr15:59929000-59944000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:59929000-59947200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr15:59929200-59941400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr15:59929200-59947600	Weak transcription	Ovary	ovary
30	chr15:59929600-59942400	Weak transcription	Colon Smooth Muscle	Colon
31	chr15:59929600-59945800	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr15:59929800-59936800	Weak transcription	Spleen	Spleen
33	chr15:59929800-59940200	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr15:59929800-59946400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr15:59930000-59937800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr15:59930600-59939200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr15:59930600-59948200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr15:59931000-59941600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr15:59931200-59937800	Weak transcription	Psoas Muscle	Psoas
40	chr15:59931200-59941000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr15:59931400-59936800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr15:59931600-59937000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr15:59932200-59937800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr15:59932800-59936800	Weak transcription	Left Ventricle	heart
45	chr15:59932800-59947800	Weak transcription	Colonic Mucosa	Colon
46	chr15:59932800-59948000	Weak transcription	Rectal Smooth Muscle	rectum
47	chr15:59933000-59937200	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr15:59934200-59936800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr15:59934200-59936800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr15:59934400-59937000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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