Variant report

Variant	rs61555280
Chromosome Location	chr3:101030800-101030801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101029972..101032937-chr3:101034309..101037228,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs56757596	1.00[AMR][1000 genomes]
rs56910465	1.00[AMR][1000 genomes]
rs57288874	1.00[AMR][1000 genomes]
rs57781534	1.00[AMR][1000 genomes]
rs59092914	1.00[AMR][1000 genomes]
rs60451587	1.00[AMR][1000 genomes]
rs60554420	1.00[AMR][1000 genomes]
rs60762263	1.00[AMR][1000 genomes]
rs61473551	1.00[AMR][1000 genomes]
rs72930558	1.00[AMR][1000 genomes]
rs72930577	1.00[AMR][1000 genomes]
rs72932471	1.00[AMR][1000 genomes]
rs72932479	1.00[AMR][1000 genomes]
rs72932482	1.00[AMR][1000 genomes]
rs72932486	1.00[AMR][1000 genomes]
rs72932493	1.00[AMR][1000 genomes]
rs72932497	1.00[AMR][1000 genomes]
rs72934305	1.00[AMR][1000 genomes]
rs72936133	1.00[AMR][1000 genomes]
rs72936166	1.00[AMR][1000 genomes]
rs72936180	1.00[AMR][1000 genomes]
rs72938074	1.00[AMR][1000 genomes]
rs72938092	1.00[AMR][1000 genomes]
rs72940339	1.00[AMR][1000 genomes]
rs72940344	1.00[AMR][1000 genomes]
rs72940361	1.00[AMR][1000 genomes]
rs72940364	1.00[AMR][1000 genomes]
rs72940372	1.00[AMR][1000 genomes]
rs72940374	1.00[AMR][1000 genomes]
rs72940386	1.00[AMR][1000 genomes]
rs72942217	1.00[AMR][1000 genomes]
rs72942240	1.00[AMR][1000 genomes]
rs72942243	1.00[AMR][1000 genomes]
rs72942266	1.00[AMR][1000 genomes]
rs72942288	1.00[AMR][1000 genomes]
rs72944104	1.00[AMR][1000 genomes]
rs72944109	1.00[AMR][1000 genomes]
rs72944117	1.00[AMR][1000 genomes]
rs72946006	1.00[AMR][1000 genomes]
rs72946019	1.00[AMR][1000 genomes]
rs72946027	1.00[AMR][1000 genomes]
rs72946028	1.00[AMR][1000 genomes]
rs72948009	1.00[AMR][1000 genomes]
rs72948019	1.00[AMR][1000 genomes]
rs9859697	1.00[AMR][1000 genomes]
rs9861669	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3439278	chr3:100936513-101162102	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1003475	chr3:101005238-101120030	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101028000-101044200	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr3:101028400-101030800	Enhancers	Fetal Kidney	kidney
3	chr3:101028800-101031000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:101028800-101032800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr3:101029000-101030800	Enhancers	Colon Smooth Muscle	Colon
6	chr3:101029000-101030800	Enhancers	Rectal Smooth Muscle	rectum
7	chr3:101029400-101044400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:101029800-101044600	Weak transcription	Primary T cells from cord blood	blood
9	chr3:101030000-101030800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:101030000-101031400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr3:101030200-101044200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr3:101030200-101044600	Weak transcription	Fetal Lung	lung
13	chr3:101030200-101045800	Weak transcription	HUVEC	blood vessel
14	chr3:101030200-101052800	Weak transcription	Fetal Stomach	stomach
15	chr3:101030400-101030800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr3:101030400-101031000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:101030400-101062400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:101030600-101032200	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr3:101030800-101065400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr3:101030800-101096400	Weak transcription	Rectal Smooth Muscle	rectum

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