Variant report

Variant	rs72930558
Chromosome Location	chr3:100947814-100947815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs56757596	1.00[AMR][1000 genomes]
rs56910465	1.00[AMR][1000 genomes]
rs57781534	1.00[AMR][1000 genomes]
rs59092914	1.00[AMR][1000 genomes]
rs60554420	1.00[AMR][1000 genomes]
rs60762263	1.00[AMR][1000 genomes]
rs61555280	1.00[AMR][1000 genomes]
rs72930577	1.00[AMR][1000 genomes]
rs72932471	1.00[AMR][1000 genomes]
rs72932479	1.00[AMR][1000 genomes]
rs72932482	1.00[AMR][1000 genomes]
rs72932486	1.00[AMR][1000 genomes]
rs72932493	1.00[AMR][1000 genomes]
rs72932497	1.00[AMR][1000 genomes]
rs72934305	1.00[AMR][1000 genomes]
rs72936133	1.00[AMR][1000 genomes]
rs72936166	1.00[AMR][1000 genomes]
rs72936180	1.00[AMR][1000 genomes]
rs72938074	1.00[AMR][1000 genomes]
rs72938092	1.00[AMR][1000 genomes]
rs72940339	1.00[AMR][1000 genomes]
rs72940344	1.00[AMR][1000 genomes]
rs72940361	1.00[AMR][1000 genomes]
rs72940364	1.00[AMR][1000 genomes]
rs72940372	1.00[AMR][1000 genomes]
rs72940374	1.00[AMR][1000 genomes]
rs72940386	1.00[AMR][1000 genomes]
rs72942217	1.00[AMR][1000 genomes]
rs72942240	1.00[AMR][1000 genomes]
rs72942243	1.00[AMR][1000 genomes]
rs72942266	1.00[AMR][1000 genomes]
rs72942288	1.00[AMR][1000 genomes]
rs9859697	1.00[AMR][1000 genomes]
rs9861669	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2754039	chr3:100882310-100981310	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3439278	chr3:100936513-101162102	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100942200-100967400	Weak transcription	HSMMtube	muscle
2	chr3:100944200-100949800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:100944600-100960000	Weak transcription	Primary T cells from cord blood	blood
4	chr3:100946000-100948200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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