Variant report

Variant	rs72932471
Chromosome Location	chr3:100986654-100986655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs56757596	1.00[AMR][1000 genomes]
rs56910465	1.00[AMR][1000 genomes]
rs57288874	1.00[AMR][1000 genomes]
rs57781534	1.00[AMR][1000 genomes]
rs59092914	1.00[AMR][1000 genomes]
rs60554420	1.00[AMR][1000 genomes]
rs60762263	1.00[AMR][1000 genomes]
rs61473551	1.00[AMR][1000 genomes]
rs61555280	1.00[AMR][1000 genomes]
rs72930558	1.00[AMR][1000 genomes]
rs72930577	1.00[AMR][1000 genomes]
rs72932479	1.00[AMR][1000 genomes]
rs72932482	1.00[AMR][1000 genomes]
rs72932486	1.00[AMR][1000 genomes]
rs72932493	1.00[AMR][1000 genomes]
rs72932497	1.00[AMR][1000 genomes]
rs72934305	1.00[AMR][1000 genomes]
rs72936133	1.00[AMR][1000 genomes]
rs72936166	1.00[AMR][1000 genomes]
rs72936180	1.00[AMR][1000 genomes]
rs72938074	1.00[AMR][1000 genomes]
rs72938092	1.00[AMR][1000 genomes]
rs72940339	1.00[AMR][1000 genomes]
rs72940344	1.00[AMR][1000 genomes]
rs72940361	1.00[AMR][1000 genomes]
rs72940364	1.00[AMR][1000 genomes]
rs72940372	1.00[AMR][1000 genomes]
rs72940374	1.00[AMR][1000 genomes]
rs72940386	1.00[AMR][1000 genomes]
rs72942217	1.00[AMR][1000 genomes]
rs72942240	1.00[AMR][1000 genomes]
rs72942243	1.00[AMR][1000 genomes]
rs72942266	1.00[AMR][1000 genomes]
rs72942288	1.00[AMR][1000 genomes]
rs72944104	1.00[AMR][1000 genomes]
rs72944109	1.00[AMR][1000 genomes]
rs72944117	1.00[AMR][1000 genomes]
rs9859697	1.00[AMR][1000 genomes]
rs9861669	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3439278	chr3:100936513-101162102	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100954800-100992600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:100955000-100994000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr3:100958800-101012800	Weak transcription	Left Ventricle	heart
4	chr3:100973800-100990600	Weak transcription	Primary T cells from cord blood	blood
5	chr3:100975400-100997800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:100979600-100995000	Weak transcription	Aorta	Aorta
7	chr3:100980800-100998000	Weak transcription	HSMM	muscle
8	chr3:100982200-100990800	Weak transcription	HSMMtube	muscle
9	chr3:100982400-100998800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:100985400-100987600	Weak transcription	Fetal Lung	lung
11	chr3:100985800-100987000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:100985800-100990800	Weak transcription	Pancreas	Pancrea
13	chr3:100985800-100992400	Weak transcription	Ovary	ovary
14	chr3:100985800-100995400	Weak transcription	Fetal Muscle Leg	muscle
15	chr3:100986000-100987200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:100986600-100998400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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