The 2.0 version of rSNPBase

Variant report

Variant rs60554420
Chromosome Location chr3:101044786-101044787
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:101030200-101045800 Weak transcription HUVEC blood vessel
2 chr3:101030200-101052800 Weak transcription Fetal Stomach stomach
3 chr3:101030400-101062400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
4 chr3:101030800-101065400 Weak transcription Skeletal Muscle Male skeletal muscle
5 chr3:101030800-101096400 Weak transcription Rectal Smooth Muscle rectum
6 chr3:101032200-101055600 Weak transcription Rectal Mucosa Donor 29 rectum
7 chr3:101037200-101044800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
8 chr3:101037200-101046000 Weak transcription Left Ventricle heart
9 chr3:101037600-101045400 Weak transcription Primary T helper naive cells from peripheral blood blood
10 chr3:101038600-101101800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
11 chr3:101038800-101045400 Weak transcription Duodenum Smooth Muscle Duodenum
12 chr3:101038800-101048000 Weak transcription Stomach Smooth Muscle stomach
13 chr3:101038800-101089800 Weak transcription Pancreas Pancrea
14 chr3:101039400-101048000 Weak transcription Fetal Muscle Trunk muscle
15 chr3:101039600-101046400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr3:101039800-101106600 Weak transcription Thymus Thymus
17 chr3:101040400-101045800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr3:101040400-101046000 Weak transcription HSMM muscle
19 chr3:101040400-101048200 Weak transcription Fetal Muscle Leg muscle
20 chr3:101040400-101070800 Weak transcription NHDF-Ad bronchial
21 chr3:101040600-101045800 Weak transcription Primary hematopoietic stem cells short term culture blood
22 chr3:101040600-101046000 Weak transcription Fetal Intestine Large intestine
23 chr3:101040600-101086800 Weak transcription Brain Cingulate Gyrus brain
24 chr3:101040800-101045400 Weak transcription Fetal Brain Female brain
25 chr3:101040800-101046000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
26 chr3:101040800-101056000 Weak transcription Lung lung
27 chr3:101040800-101076000 Weak transcription Esophagus oesophagus
28 chr3:101040800-101090000 Weak transcription Brain Angular Gyrus brain
29 chr3:101041000-101044800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
30 chr3:101042000-101045200 Weak transcription Placenta Amnion Placenta Amnion
31 chr3:101042000-101069200 Strong transcription Primary T helper cells fromperipheralblood blood
32 chr3:101042200-101070800 Weak transcription Osteobl bone
33 chr3:101042400-101045800 Weak transcription Ovary ovary
34 chr3:101042600-101046000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
35 chr3:101042600-101048200 Weak transcription Fetal Intestine Small intestine
36 chr3:101042800-101046000 Weak transcription Rectal Mucosa Donor 31 rectum
37 chr3:101042800-101046400 Weak transcription Duodenum Mucosa Duodenum
38 chr3:101042800-101061800 Weak transcription Small Intestine intestine
39 chr3:101042800-101089600 Weak transcription NH-A brain
40 chr3:101043000-101059800 Weak transcription Fetal Kidney kidney
41 chr3:101043200-101044800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
42 chr3:101043200-101045400 Weak transcription Primary neutrophils fromperipheralblood blood
43 chr3:101043200-101045800 Weak transcription Primary T helper naive cells fromperipheralblood blood
44 chr3:101043200-101076000 Weak transcription Brain Hippocampus Middle brain
45 chr3:101043200-101105000 Weak transcription Brain Anterior Caudate brain
46 chr3:101043400-101044800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr3:101043400-101046200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
48 chr3:101043400-101047000 Strong transcription Liver Liver
49 chr3:101043600-101045200 Weak transcription Primary T killer memory cells from peripheral blood blood
50 chr3:101043600-101045800 Weak transcription Primary hematopoietic stem cells blood

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Last update: Aug 31, 2015