Variant report

Variant	rs72948052
Chromosome Location	chr3:101276723-101276724
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr3:101276249-101276923	HEK293	kidney:	n/a	n/a
2	IRF1	chr3:101276523-101276797	K562	blood:	n/a	chr3:101276670-101276680 chr3:101276669-101276682 chr3:101276668-101276688 chr3:101276670-101276684 chr3:101276669-101276682 chr3:101276669-101276683 chr3:101276668-101276679 chr3:101276666-101276680
3	EP300	chr3:101276243-101276756	K562	blood:	n/a	n/a
4	TCF7L2	chr3:101276229-101276865	HEK293	kidney:	n/a	n/a
5	RCOR1	chr3:101276119-101276760	K562	blood:	n/a	n/a
6	IRF1	chr3:101276441-101276956	K562	blood:	n/a	chr3:101276670-101276680 chr3:101276669-101276682 chr3:101276668-101276688 chr3:101276670-101276684 chr3:101276669-101276682 chr3:101276669-101276683 chr3:101276668-101276679 chr3:101276666-101276680

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101273701..101278285-chr3:101278645..101282162,6	K562	blood:

Variant related genes	Relation type
TRMT10C	TF binding region
ENSG00000174173	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs56757596	1.00[AMR][1000 genomes]
rs56871732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57288874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57768297	1.00[AMR][1000 genomes]
rs58060577	1.00[AMR][1000 genomes]
rs59092914	1.00[AMR][1000 genomes]
rs59212280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59610252	1.00[AMR][1000 genomes]
rs59761426	1.00[AMR][1000 genomes]
rs59790563	1.00[AMR][1000 genomes]
rs60451587	1.00[AMR][1000 genomes]
rs60491518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60554420	1.00[AMR][1000 genomes]
rs61302621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61468230	1.00[AMR][1000 genomes]
rs61473551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72931705	1.00[AMR][1000 genomes]
rs72931709	1.00[AMR][1000 genomes]
rs72931710	1.00[AMR][1000 genomes]
rs72931711	1.00[AMR][1000 genomes]
rs72931715	1.00[AMR][1000 genomes]
rs72931719	1.00[AMR][1000 genomes]
rs72931774	1.00[AMR][1000 genomes]
rs72931789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72933808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72933810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72933821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72933838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935852	1.00[AMR][1000 genomes]
rs72935865	1.00[AMR][1000 genomes]
rs72935871	1.00[AMR][1000 genomes]
rs72935875	1.00[AMR][1000 genomes]
rs72935894	1.00[AMR][1000 genomes]
rs72937635	1.00[AMR][1000 genomes]
rs72937638	1.00[AMR][1000 genomes]
rs72937639	1.00[AMR][1000 genomes]
rs72937642	1.00[AMR][1000 genomes]
rs72937646	1.00[AMR][1000 genomes]
rs72937653	1.00[AMR][1000 genomes]
rs72937810	1.00[AMR][1000 genomes]
rs72937817	1.00[AMR][1000 genomes]
rs72938074	1.00[AMR][1000 genomes]
rs72938092	1.00[AMR][1000 genomes]
rs72940339	1.00[AMR][1000 genomes]
rs72940344	1.00[AMR][1000 genomes]
rs72940361	1.00[AMR][1000 genomes]
rs72940364	1.00[AMR][1000 genomes]
rs72940372	1.00[AMR][1000 genomes]
rs72940374	1.00[AMR][1000 genomes]
rs72940386	1.00[AMR][1000 genomes]
rs72942217	1.00[AMR][1000 genomes]
rs72942240	1.00[AMR][1000 genomes]
rs72942243	1.00[AMR][1000 genomes]
rs72942266	1.00[AMR][1000 genomes]
rs72942288	1.00[AMR][1000 genomes]
rs72944104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72944109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72944117	1.00[AMR][1000 genomes]
rs72946006	1.00[AMR][1000 genomes]
rs72946019	1.00[AMR][1000 genomes]
rs72946027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72946028	1.00[AMR][1000 genomes]
rs72948009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72948019	1.00[AMR][1000 genomes]
rs72948050	1.00[AMR][1000 genomes]
rs72948055	1.00[AMR][1000 genomes]
rs72948056	1.00[AMR][1000 genomes]
rs72948070	1.00[AMR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101273000-101277600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:101274600-101280400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:101276000-101280000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:101276400-101276800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
5	chr3:101276600-101276800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:101276600-101276800	Flanking Active TSS	K562	blood
7	chr3:101276600-101277000	Enhancers	HepG2	liver
8	chr3:101276600-101280400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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