Variant report

Variant	rs72937639
Chromosome Location	chr3:101510979-101510980
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs16844264	1.00[AMR][1000 genomes]
rs56871732	1.00[AMR][1000 genomes]
rs57768297	1.00[AMR][1000 genomes]
rs58060577	1.00[AMR][1000 genomes]
rs59212280	1.00[AMR][1000 genomes]
rs59610252	1.00[AMR][1000 genomes]
rs59761426	1.00[AMR][1000 genomes]
rs59790563	1.00[AMR][1000 genomes]
rs60491518	1.00[AMR][1000 genomes]
rs61302621	1.00[AMR][1000 genomes]
rs61468230	1.00[AMR][1000 genomes]
rs72931705	1.00[AMR][1000 genomes]
rs72931709	1.00[AMR][1000 genomes]
rs72931710	1.00[AMR][1000 genomes]
rs72931711	1.00[AMR][1000 genomes]
rs72931715	1.00[AMR][1000 genomes]
rs72931719	1.00[AMR][1000 genomes]
rs72931774	1.00[AMR][1000 genomes]
rs72931789	1.00[AMR][1000 genomes]
rs72933808	1.00[AMR][1000 genomes]
rs72933810	1.00[AMR][1000 genomes]
rs72933821	1.00[AMR][1000 genomes]
rs72933838	1.00[AMR][1000 genomes]
rs72935816	1.00[AMR][1000 genomes]
rs72935835	1.00[AMR][1000 genomes]
rs72935839	1.00[AMR][1000 genomes]
rs72935846	1.00[AMR][1000 genomes]
rs72935852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935871	1.00[AMR][1000 genomes]
rs72935875	1.00[AMR][1000 genomes]
rs72935894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937701	1.00[AMR][1000 genomes]
rs72937810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72939605	1.00[AMR][1000 genomes]
rs72939606	1.00[AMR][1000 genomes]
rs72947370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72947385	1.00[AMR][1000 genomes]
rs72948050	1.00[AMR][1000 genomes]
rs72948052	1.00[AMR][1000 genomes]
rs72948055	1.00[AMR][1000 genomes]
rs72948056	1.00[AMR][1000 genomes]
rs72948070	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv997407	chr3:101384031-101611391	Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv536675	chr3:101384031-101611391	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101498800-101519000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:101498800-101533800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:101498800-101546200	Weak transcription	Esophagus	oesophagus
4	chr3:101499000-101513200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:101499000-101523000	Weak transcription	Stomach Mucosa	stomach
6	chr3:101499000-101533000	Weak transcription	Fetal Intestine Large	intestine
7	chr3:101499200-101529600	Weak transcription	Small Intestine	intestine
8	chr3:101499800-101512200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr3:101499800-101524800	Weak transcription	HepG2	liver
10	chr3:101500400-101511800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:101500600-101511000	Strong transcription	HSMM	muscle
12	chr3:101501200-101511000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:101501200-101516200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:101501400-101511200	Strong transcription	Fetal Muscle Leg	muscle
15	chr3:101501600-101511000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:101501600-101511000	Strong transcription	Fetal Brain Female	brain
17	chr3:101501600-101515000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:101502200-101511000	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr3:101502200-101511200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr3:101502200-101511600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:101502200-101516000	Strong transcription	A549	lung
22	chr3:101502600-101540200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:101502600-101540200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:101502800-101528200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr3:101503200-101522400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr3:101503800-101511000	Strong transcription	Skeletal Muscle Female	skeletal muscle
27	chr3:101504600-101512000	Strong transcription	Primary hematopoietic stem cells	blood
28	chr3:101504600-101514800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr3:101504600-101520200	Weak transcription	Duodenum Mucosa	Duodenum
30	chr3:101504600-101524400	Weak transcription	Gastric	stomach
31	chr3:101504800-101511400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr3:101504800-101511400	Strong transcription	Brain Anterior Caudate	brain
33	chr3:101504800-101515800	Strong transcription	Fetal Thymus	thymus
34	chr3:101504800-101533600	Weak transcription	Pancreas	Pancrea
35	chr3:101504800-101546000	Weak transcription	Colonic Mucosa	Colon
36	chr3:101505000-101512600	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr3:101505000-101517400	Weak transcription	Fetal Heart	heart
38	chr3:101505000-101520000	Weak transcription	Right Ventricle	heart
39	chr3:101505200-101511000	Strong transcription	Skeletal Muscle Male	skeletal muscle
40	chr3:101505200-101512200	Weak transcription	NHLF	lung
41	chr3:101505200-101514800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr3:101505400-101514600	Weak transcription	Spleen	Spleen
43	chr3:101505400-101533600	Weak transcription	Right Atrium	heart
44	chr3:101505600-101514800	Weak transcription	Adipose Nuclei	Adipose
45	chr3:101505800-101515600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr3:101506000-101511000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr3:101506400-101512200	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr3:101506400-101514600	Weak transcription	HUVEC	blood vessel
49	chr3:101506400-101514800	Weak transcription	Lung	lung
50	chr3:101506600-101512200	Weak transcription	HSMMtube	muscle

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