Variant report

Variant	rs72947370
Chromosome Location	chr3:101606424-101606425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101604292..101607119-chr3:101609303..101612287,2	MCF-7	breast:
2	chr3:101601258..101603379-chr3:101605438..101607316,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs16844264	1.00[AMR][1000 genomes]
rs56871732	1.00[AMR][1000 genomes]
rs59212280	1.00[AMR][1000 genomes]
rs59761426	1.00[AMR][1000 genomes]
rs61302621	1.00[AMR][1000 genomes]
rs61468230	1.00[AMR][1000 genomes]
rs72933808	1.00[AMR][1000 genomes]
rs72933810	1.00[AMR][1000 genomes]
rs72933821	1.00[AMR][1000 genomes]
rs72933838	1.00[AMR][1000 genomes]
rs72935816	1.00[AMR][1000 genomes]
rs72935835	1.00[AMR][1000 genomes]
rs72935839	1.00[AMR][1000 genomes]
rs72935846	1.00[AMR][1000 genomes]
rs72935852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935871	1.00[AMR][1000 genomes]
rs72935875	1.00[AMR][1000 genomes]
rs72935894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937701	1.00[AMR][1000 genomes]
rs72937810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72939605	1.00[AMR][1000 genomes]
rs72939606	1.00[AMR][1000 genomes]
rs72947385	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv997407	chr3:101384031-101611391	Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv536675	chr3:101384031-101611391	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	esv3351469	chr3:101511702-101866448	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
5	nsv1010762	chr3:101584836-101803821	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101597400-101607000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:101605800-101607000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:101605800-101607400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:101606000-101606800	Enhancers	Esophagus	oesophagus
5	chr3:101606000-101607000	Weak transcription	NHEK	skin
6	chr3:101606000-101609600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr3:101606200-101607200	Weak transcription	Psoas Muscle	Psoas
8	chr3:101606200-101609200	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr3:101606400-101608400	Enhancers	Colon Smooth Muscle	Colon

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