Variant report

Variant	rs72937664
Chromosome Location	chr3:101529751-101529752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:101527598..101532607-chr3:101943498..101946338,5	MCF-7	breast:
2	chr3:101525788..101530235-chr3:101566899..101572223,5	K562	blood:
3	chr3:101528140..101529807-chr3:101566899..101568797,2	K562	blood:
4	chr3:101528609..101531932-chr3:101941628..101943518,3	MCF-7	breast:
5	chr3:101527585..101537705-chr3:101566838..101571797,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144802	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs16844264	1.00[AMR][1000 genomes]
rs56871732	1.00[AMR][1000 genomes]
rs57768297	1.00[AMR][1000 genomes]
rs58060577	1.00[AMR][1000 genomes]
rs59212280	1.00[AMR][1000 genomes]
rs59610252	1.00[AMR][1000 genomes]
rs59761426	1.00[AMR][1000 genomes]
rs59790563	1.00[AMR][1000 genomes]
rs60491518	1.00[AMR][1000 genomes]
rs61302621	1.00[AMR][1000 genomes]
rs61468230	1.00[AMR][1000 genomes]
rs72931705	1.00[AMR][1000 genomes]
rs72931709	1.00[AMR][1000 genomes]
rs72931710	1.00[AMR][1000 genomes]
rs72931711	1.00[AMR][1000 genomes]
rs72931715	1.00[AMR][1000 genomes]
rs72931719	1.00[AMR][1000 genomes]
rs72931774	1.00[AMR][1000 genomes]
rs72931789	1.00[AMR][1000 genomes]
rs72933808	1.00[AMR][1000 genomes]
rs72933810	1.00[AMR][1000 genomes]
rs72933821	1.00[AMR][1000 genomes]
rs72933838	1.00[AMR][1000 genomes]
rs72935816	1.00[AMR][1000 genomes]
rs72935835	1.00[AMR][1000 genomes]
rs72935839	1.00[AMR][1000 genomes]
rs72935846	1.00[AMR][1000 genomes]
rs72935852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935871	1.00[AMR][1000 genomes]
rs72935875	1.00[AMR][1000 genomes]
rs72935894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937701	1.00[AMR][1000 genomes]
rs72937810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72939605	1.00[AMR][1000 genomes]
rs72939606	1.00[AMR][1000 genomes]
rs72947370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72947385	1.00[AMR][1000 genomes]
rs72948070	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv997407	chr3:101384031-101611391	Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv536675	chr3:101384031-101611391	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	esv3351469	chr3:101511702-101866448	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101498800-101533800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:101498800-101546200	Weak transcription	Esophagus	oesophagus
3	chr3:101499000-101533000	Weak transcription	Fetal Intestine Large	intestine
4	chr3:101502600-101540200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:101502600-101540200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:101504800-101533600	Weak transcription	Pancreas	Pancrea
7	chr3:101504800-101546000	Weak transcription	Colonic Mucosa	Colon
8	chr3:101505400-101533600	Weak transcription	Right Atrium	heart
9	chr3:101511000-101536000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr3:101515200-101540200	Weak transcription	NHLF	lung
11	chr3:101515400-101535800	Weak transcription	NHEK	skin
12	chr3:101515400-101546000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr3:101516000-101546000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr3:101520400-101546000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr3:101520800-101532000	Weak transcription	Psoas Muscle	Psoas
16	chr3:101520800-101535800	Weak transcription	Aorta	Aorta
17	chr3:101520800-101535800	Weak transcription	Spleen	Spleen
18	chr3:101520800-101536200	Weak transcription	Right Ventricle	heart
19	chr3:101520800-101539600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:101520800-101540200	Weak transcription	Lung	lung
21	chr3:101520800-101546400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr3:101521000-101531800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:101521000-101532800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr3:101521000-101533000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:101521000-101535800	Weak transcription	Thymus	Thymus
26	chr3:101521200-101533800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr3:101521200-101535800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr3:101521200-101546200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr3:101521400-101535800	Weak transcription	Brain Germinal Matrix	brain
30	chr3:101521400-101535800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr3:101521400-101536000	Weak transcription	Fetal Brain Female	brain
32	chr3:101522000-101535800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr3:101522200-101535400	Weak transcription	HSMMtube	muscle
34	chr3:101522200-101540600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr3:101522800-101532000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr3:101522800-101532000	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr3:101522800-101535800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr3:101522800-101535800	Weak transcription	Fetal Muscle Trunk	muscle
39	chr3:101522800-101535800	Weak transcription	Ovary	ovary
40	chr3:101522800-101536200	Weak transcription	Fetal Stomach	stomach
41	chr3:101522800-101540200	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr3:101523000-101535800	Weak transcription	Fetal Brain Male	brain
43	chr3:101523200-101533000	Weak transcription	Stomach Mucosa	stomach
44	chr3:101523200-101536200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr3:101523400-101540400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr3:101523600-101533000	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr3:101523600-101535600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr3:101523800-101540200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr3:101525600-101533000	Weak transcription	HepG2	liver
50	chr3:101525800-101540200	Weak transcription	Osteobl	bone

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