Variant report

Variant	rs72931774
Chromosome Location	chr3:101335980-101335981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs16844264	1.00[AMR][1000 genomes]
rs56871732	1.00[AMR][1000 genomes]
rs57288874	1.00[AMR][1000 genomes]
rs57768297	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58060577	1.00[AMR][1000 genomes]
rs59092914	1.00[AMR][1000 genomes]
rs59212280	1.00[AMR][1000 genomes]
rs59610252	1.00[AMR][1000 genomes]
rs59761426	1.00[AMR][1000 genomes]
rs59790563	1.00[AMR][1000 genomes]
rs60451587	1.00[AMR][1000 genomes]
rs60491518	1.00[AMR][1000 genomes]
rs61302621	1.00[AMR][1000 genomes]
rs61468230	1.00[AMR][1000 genomes]
rs61473551	1.00[AMR][1000 genomes]
rs72931705	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72931709	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72931710	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72931711	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72931715	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72931719	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72931789	1.00[AMR][1000 genomes]
rs72933808	1.00[AMR][1000 genomes]
rs72933810	1.00[AMR][1000 genomes]
rs72933821	1.00[AMR][1000 genomes]
rs72933838	1.00[AMR][1000 genomes]
rs72935816	1.00[AMR][1000 genomes]
rs72935835	1.00[AMR][1000 genomes]
rs72935839	1.00[AMR][1000 genomes]
rs72935846	1.00[AMR][1000 genomes]
rs72935852	1.00[AMR][1000 genomes]
rs72935865	1.00[AMR][1000 genomes]
rs72935871	1.00[AMR][1000 genomes]
rs72935875	1.00[AMR][1000 genomes]
rs72935894	1.00[AMR][1000 genomes]
rs72937635	1.00[AMR][1000 genomes]
rs72937638	1.00[AMR][1000 genomes]
rs72937639	1.00[AMR][1000 genomes]
rs72937642	1.00[AMR][1000 genomes]
rs72937646	1.00[AMR][1000 genomes]
rs72937653	1.00[AMR][1000 genomes]
rs72937664	1.00[AMR][1000 genomes]
rs72937667	1.00[AMR][1000 genomes]
rs72937684	1.00[AMR][1000 genomes]
rs72937701	1.00[AMR][1000 genomes]
rs72937810	1.00[AMR][1000 genomes]
rs72937817	1.00[AMR][1000 genomes]
rs72939605	1.00[AMR][1000 genomes]
rs72939606	1.00[AMR][1000 genomes]
rs72940386	1.00[AMR][1000 genomes]
rs72942217	1.00[AMR][1000 genomes]
rs72942240	1.00[AMR][1000 genomes]
rs72942243	1.00[AMR][1000 genomes]
rs72942266	1.00[AMR][1000 genomes]
rs72942288	1.00[AMR][1000 genomes]
rs72944104	1.00[AMR][1000 genomes]
rs72944109	1.00[AMR][1000 genomes]
rs72944117	1.00[AMR][1000 genomes]
rs72946006	1.00[AMR][1000 genomes]
rs72946019	1.00[AMR][1000 genomes]
rs72946027	1.00[AMR][1000 genomes]
rs72946028	1.00[AMR][1000 genomes]
rs72948009	1.00[AMR][1000 genomes]
rs72948019	1.00[AMR][1000 genomes]
rs72948050	1.00[AMR][1000 genomes]
rs72948052	1.00[AMR][1000 genomes]
rs72948055	1.00[AMR][1000 genomes]
rs72948056	1.00[AMR][1000 genomes]
rs72948070	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv963347	chr3:101318121-101342898	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101331400-101342600	Weak transcription	K562	blood
2	chr3:101331800-101341600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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