Variant report

Variant	rs72935846
Chromosome Location	chr3:101428478-101428479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr3:101428387-101428583	PANC-1	pancreas:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101427839..101430980-chr3:101433636..101436230,3	MCF-7	breast:
2	chr3:101427912..101430802-chr3:101434415..101437131,2	K562	blood:

Variant related genes	Relation type
PDCL3P4	TF binding region

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs16844264	1.00[AMR][1000 genomes]
rs56871732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57288874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57768297	1.00[AMR][1000 genomes]
rs58060577	1.00[AMR][1000 genomes]
rs59212280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59610252	1.00[AMR][1000 genomes]
rs59761426	1.00[AMR][1000 genomes]
rs59790563	1.00[AMR][1000 genomes]
rs60451587	1.00[AMR][1000 genomes]
rs60491518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61302621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61468230	1.00[AMR][1000 genomes]
rs61473551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72931705	1.00[AMR][1000 genomes]
rs72931709	1.00[AMR][1000 genomes]
rs72931710	1.00[AMR][1000 genomes]
rs72931711	1.00[AMR][1000 genomes]
rs72931715	1.00[AMR][1000 genomes]
rs72931719	1.00[AMR][1000 genomes]
rs72931774	1.00[AMR][1000 genomes]
rs72931789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72933808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72933810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72933821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72933838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935852	1.00[AMR][1000 genomes]
rs72935865	1.00[AMR][1000 genomes]
rs72935871	1.00[AMR][1000 genomes]
rs72935875	1.00[AMR][1000 genomes]
rs72935894	1.00[AMR][1000 genomes]
rs72937635	1.00[AMR][1000 genomes]
rs72937638	1.00[AMR][1000 genomes]
rs72937639	1.00[AMR][1000 genomes]
rs72937642	1.00[AMR][1000 genomes]
rs72937646	1.00[AMR][1000 genomes]
rs72937653	1.00[AMR][1000 genomes]
rs72937664	1.00[AMR][1000 genomes]
rs72937667	1.00[AMR][1000 genomes]
rs72937684	1.00[AMR][1000 genomes]
rs72937701	1.00[AMR][1000 genomes]
rs72937810	1.00[AMR][1000 genomes]
rs72937817	1.00[AMR][1000 genomes]
rs72939605	1.00[AMR][1000 genomes]
rs72939606	1.00[AMR][1000 genomes]
rs72944109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72944117	1.00[AMR][1000 genomes]
rs72946006	1.00[AMR][1000 genomes]
rs72946019	1.00[AMR][1000 genomes]
rs72946027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72946028	1.00[AMR][1000 genomes]
rs72947370	1.00[AMR][1000 genomes]
rs72947385	1.00[AMR][1000 genomes]
rs72948009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72948019	1.00[AMR][1000 genomes]
rs72948050	1.00[AMR][1000 genomes]
rs72948052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72948055	1.00[AMR][1000 genomes]
rs72948056	1.00[AMR][1000 genomes]
rs72948070	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv997407	chr3:101384031-101611391	Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv536675	chr3:101384031-101611391	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv963348	chr3:101424441-101434477	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101422800-101430200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:101423800-101430000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:101423800-101430600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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