Variant report

Variant	rs72948050
Chromosome Location	chr3:101276371-101276372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr3:101276306-101276662	HepG2	liver:	n/a	chr3:101276478-101276489
2	CEBPB	chr3:101276340-101276541	H1-hESC	embryonic stem cell:	n/a	chr3:101276478-101276489
3	CEBPB	chr3:101276331-101276523	Hela-S3	cervix:	n/a	chr3:101276478-101276489
4	MYC	chr3:101276239-101276642	K562	blood:	n/a	n/a
5	TBP	chr3:101276337-101276439	K562	blood:	n/a	n/a
6	ATF1	chr3:101276319-101276662	K562	blood:	n/a	n/a
7	KAP1	chr3:101276249-101276923	HEK293	kidney:	n/a	n/a
8	JUND	chr3:101276246-101276697	K562	blood:	n/a	n/a
9	CEBPB	chr3:101276253-101276678	K562	blood:	n/a	chr3:101276478-101276489
10	ZNF384	chr3:101275777-101276622	K562	blood:	n/a	n/a
11	CEBPD	chr3:101276261-101276666	K562	blood:	n/a	n/a
12	EP300	chr3:101276243-101276756	K562	blood:	n/a	n/a
13	TCF7L2	chr3:101276229-101276865	HEK293	kidney:	n/a	n/a
14	CEBPD	chr3:101276247-101276702	K562	blood:	n/a	n/a
15	RCOR1	chr3:101276119-101276760	K562	blood:	n/a	n/a
16	CEBPB	chr3:101276307-101276602	MCF-7	breast:	n/a	chr3:101276478-101276489
17	CEBPB	chr3:101276256-101276680	K562	blood:	n/a	chr3:101276478-101276489
18	CEBPB	chr3:101276312-101276648	IMR90	lung:	n/a	chr3:101276478-101276489
19	CEBPB	chr3:101276334-101276591	K562	blood:	n/a	chr3:101276478-101276489

No.	Distal block	Cell Line	Cell type
1	chr3:101273701..101278285-chr3:101278645..101282162,6	K562	blood:
2	chr3:101273531..101276601-chr3:101279103..101282496,5	MCF-7	breast:
3	chr3:101273703..101276448-chr3:101288119..101291518,3	K562	blood:

Variant related genes	Relation type
TRMT10C	TF binding region
ENSG00000174173	Chromatin interaction

rs_ID	r²[population]
rs56757596	1.00[AMR][1000 genomes]
rs56871732	1.00[AMR][1000 genomes]
rs57288874	1.00[AMR][1000 genomes]
rs57768297	1.00[AMR][1000 genomes]
rs58060577	1.00[AMR][1000 genomes]
rs59092914	1.00[AMR][1000 genomes]
rs59212280	1.00[AMR][1000 genomes]
rs59610252	1.00[AMR][1000 genomes]
rs59761426	1.00[AMR][1000 genomes]
rs59790563	1.00[AMR][1000 genomes]
rs60451587	1.00[AMR][1000 genomes]
rs60491518	1.00[AMR][1000 genomes]
rs60554420	1.00[AMR][1000 genomes]
rs61302621	1.00[AMR][1000 genomes]
rs61468230	1.00[AMR][1000 genomes]
rs61473551	1.00[AMR][1000 genomes]
rs72931705	1.00[AMR][1000 genomes]
rs72931709	1.00[AMR][1000 genomes]
rs72931710	1.00[AMR][1000 genomes]
rs72931711	1.00[AMR][1000 genomes]
rs72931715	1.00[AMR][1000 genomes]
rs72931719	1.00[AMR][1000 genomes]
rs72931774	1.00[AMR][1000 genomes]
rs72931789	1.00[AMR][1000 genomes]
rs72933808	1.00[AMR][1000 genomes]
rs72933810	1.00[AMR][1000 genomes]
rs72933821	1.00[AMR][1000 genomes]
rs72933838	1.00[AMR][1000 genomes]
rs72935816	1.00[AMR][1000 genomes]
rs72935835	1.00[AMR][1000 genomes]
rs72935839	1.00[AMR][1000 genomes]
rs72935846	1.00[AMR][1000 genomes]
rs72935852	1.00[AMR][1000 genomes]
rs72935865	1.00[AMR][1000 genomes]
rs72935871	1.00[AMR][1000 genomes]
rs72935875	1.00[AMR][1000 genomes]
rs72935894	1.00[AMR][1000 genomes]
rs72937635	1.00[AMR][1000 genomes]
rs72937638	1.00[AMR][1000 genomes]
rs72937639	1.00[AMR][1000 genomes]
rs72937642	1.00[AMR][1000 genomes]
rs72937646	1.00[AMR][1000 genomes]
rs72937653	1.00[AMR][1000 genomes]
rs72937810	1.00[AMR][1000 genomes]
rs72937817	1.00[AMR][1000 genomes]
rs72938074	1.00[AMR][1000 genomes]
rs72938092	1.00[AMR][1000 genomes]
rs72940339	1.00[AMR][1000 genomes]
rs72940344	1.00[AMR][1000 genomes]
rs72940361	1.00[AMR][1000 genomes]
rs72940364	1.00[AMR][1000 genomes]
rs72940372	1.00[AMR][1000 genomes]
rs72940374	1.00[AMR][1000 genomes]
rs72940386	1.00[AMR][1000 genomes]
rs72942217	1.00[AMR][1000 genomes]
rs72942240	1.00[AMR][1000 genomes]
rs72942243	1.00[AMR][1000 genomes]
rs72942266	1.00[AMR][1000 genomes]
rs72942288	1.00[AMR][1000 genomes]
rs72944104	1.00[AMR][1000 genomes]
rs72944109	1.00[AMR][1000 genomes]
rs72944117	1.00[AMR][1000 genomes]
rs72946006	1.00[AMR][1000 genomes]
rs72946019	1.00[AMR][1000 genomes]
rs72946027	1.00[AMR][1000 genomes]
rs72946028	1.00[AMR][1000 genomes]
rs72948009	1.00[AMR][1000 genomes]
rs72948019	1.00[AMR][1000 genomes]
rs72948052	1.00[AMR][1000 genomes]
rs72948055	1.00[AMR][1000 genomes]
rs72948056	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72948070	1.00[AMR][1000 genomes]

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101273000-101277600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:101274600-101280400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:101275400-101276600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:101276000-101276400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
5	chr3:101276000-101276400	Active TSS	HepG2	liver
6	chr3:101276000-101276600	Active TSS	Placenta	Placenta
7	chr3:101276000-101280000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:101276200-101276400	Flanking Active TSS	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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