Variant report

Variant	rs72937642
Chromosome Location	chr3:101513267-101513268
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs16844264	1.00[AMR][1000 genomes]
rs56871732	1.00[AMR][1000 genomes]
rs57768297	1.00[AMR][1000 genomes]
rs58060577	1.00[AMR][1000 genomes]
rs59212280	1.00[AMR][1000 genomes]
rs59610252	1.00[AMR][1000 genomes]
rs59761426	1.00[AMR][1000 genomes]
rs59790563	1.00[AMR][1000 genomes]
rs60491518	1.00[AMR][1000 genomes]
rs61302621	1.00[AMR][1000 genomes]
rs61468230	1.00[AMR][1000 genomes]
rs72931705	1.00[AMR][1000 genomes]
rs72931709	1.00[AMR][1000 genomes]
rs72931710	1.00[AMR][1000 genomes]
rs72931711	1.00[AMR][1000 genomes]
rs72931715	1.00[AMR][1000 genomes]
rs72931719	1.00[AMR][1000 genomes]
rs72931774	1.00[AMR][1000 genomes]
rs72931789	1.00[AMR][1000 genomes]
rs72933808	1.00[AMR][1000 genomes]
rs72933810	1.00[AMR][1000 genomes]
rs72933821	1.00[AMR][1000 genomes]
rs72933838	1.00[AMR][1000 genomes]
rs72935816	1.00[AMR][1000 genomes]
rs72935835	1.00[AMR][1000 genomes]
rs72935839	1.00[AMR][1000 genomes]
rs72935846	1.00[AMR][1000 genomes]
rs72935852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935871	1.00[AMR][1000 genomes]
rs72935875	1.00[AMR][1000 genomes]
rs72935894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937701	1.00[AMR][1000 genomes]
rs72937810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72939605	1.00[AMR][1000 genomes]
rs72939606	1.00[AMR][1000 genomes]
rs72947370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72947385	1.00[AMR][1000 genomes]
rs72948050	1.00[AMR][1000 genomes]
rs72948052	1.00[AMR][1000 genomes]
rs72948055	1.00[AMR][1000 genomes]
rs72948056	1.00[AMR][1000 genomes]
rs72948070	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv997407	chr3:101384031-101611391	Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv536675	chr3:101384031-101611391	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	esv3351469	chr3:101511702-101866448	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101498800-101519000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:101498800-101533800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:101498800-101546200	Weak transcription	Esophagus	oesophagus
4	chr3:101499000-101523000	Weak transcription	Stomach Mucosa	stomach
5	chr3:101499000-101533000	Weak transcription	Fetal Intestine Large	intestine
6	chr3:101499200-101529600	Weak transcription	Small Intestine	intestine
7	chr3:101499800-101524800	Weak transcription	HepG2	liver
8	chr3:101501200-101516200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:101501600-101515000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:101502200-101516000	Strong transcription	A549	lung
11	chr3:101502600-101540200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:101502600-101540200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:101502800-101528200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr3:101503200-101522400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr3:101504600-101514800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:101504600-101520200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr3:101504600-101524400	Weak transcription	Gastric	stomach
18	chr3:101504800-101515800	Strong transcription	Fetal Thymus	thymus
19	chr3:101504800-101533600	Weak transcription	Pancreas	Pancrea
20	chr3:101504800-101546000	Weak transcription	Colonic Mucosa	Colon
21	chr3:101505000-101517400	Weak transcription	Fetal Heart	heart
22	chr3:101505000-101520000	Weak transcription	Right Ventricle	heart
23	chr3:101505200-101514800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr3:101505400-101514600	Weak transcription	Spleen	Spleen
25	chr3:101505400-101533600	Weak transcription	Right Atrium	heart
26	chr3:101505600-101514800	Weak transcription	Adipose Nuclei	Adipose
27	chr3:101505800-101515600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr3:101506400-101514600	Weak transcription	HUVEC	blood vessel
29	chr3:101506400-101514800	Weak transcription	Lung	lung
30	chr3:101507000-101514600	Weak transcription	HMEC	breast
31	chr3:101507400-101513400	Strong transcription	Primary T cells from cord blood	blood
32	chr3:101508000-101514000	ZNF genes & repeats	GM12878-XiMat	blood
33	chr3:101508000-101515400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:101508200-101516200	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr3:101508600-101514800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr3:101508600-101516200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
37	chr3:101509200-101514800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr3:101509800-101514800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr3:101509800-101520000	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr3:101509800-101528200	Weak transcription	Fetal Intestine Small	intestine
41	chr3:101510000-101522400	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr3:101510200-101514600	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr3:101510200-101522400	Weak transcription	Fetal Brain Male	brain
44	chr3:101510200-101525600	Weak transcription	Placenta	Placenta
45	chr3:101510400-101514800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr3:101510600-101514800	Weak transcription	Aorta	Aorta
47	chr3:101510800-101514600	Weak transcription	Left Ventricle	heart
48	chr3:101510800-101514800	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr3:101511000-101513600	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr3:101511000-101514600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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