Variant report

Variant	rs9859697
Chromosome Location	chr3:100998413-100998414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100997650..101000246-chr3:101010529..101013329,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs56757596	1.00[AMR][1000 genomes]
rs56910465	1.00[AMR][1000 genomes]
rs57288874	1.00[AMR][1000 genomes]
rs57781534	1.00[AMR][1000 genomes]
rs59092914	1.00[AMR][1000 genomes]
rs60554420	1.00[AMR][1000 genomes]
rs60762263	1.00[AMR][1000 genomes]
rs61473551	1.00[AMR][1000 genomes]
rs61555280	1.00[AMR][1000 genomes]
rs72930558	1.00[AMR][1000 genomes]
rs72930577	1.00[AMR][1000 genomes]
rs72932471	1.00[AMR][1000 genomes]
rs72932479	1.00[AMR][1000 genomes]
rs72932482	1.00[AMR][1000 genomes]
rs72932486	1.00[AMR][1000 genomes]
rs72932492	0.80[AFR][1000 genomes]
rs72932493	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72932497	1.00[AMR][1000 genomes]
rs72934305	1.00[AMR][1000 genomes]
rs72936133	1.00[AMR][1000 genomes]
rs72936166	1.00[AMR][1000 genomes]
rs72936180	1.00[AMR][1000 genomes]
rs72938074	1.00[AMR][1000 genomes]
rs72938092	1.00[AMR][1000 genomes]
rs72940339	1.00[AMR][1000 genomes]
rs72940344	1.00[AMR][1000 genomes]
rs72940361	1.00[AMR][1000 genomes]
rs72940364	1.00[AMR][1000 genomes]
rs72940372	1.00[AMR][1000 genomes]
rs72940374	1.00[AMR][1000 genomes]
rs72940386	1.00[AMR][1000 genomes]
rs72942217	1.00[AMR][1000 genomes]
rs72942240	1.00[AMR][1000 genomes]
rs72942243	1.00[AMR][1000 genomes]
rs72942266	1.00[AMR][1000 genomes]
rs72942288	1.00[AMR][1000 genomes]
rs72944104	1.00[AMR][1000 genomes]
rs72944109	1.00[AMR][1000 genomes]
rs72944117	1.00[AMR][1000 genomes]
rs72946006	1.00[AMR][1000 genomes]
rs9861669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9875276	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3439278	chr3:100936513-101162102	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100958800-101012800	Weak transcription	Left Ventricle	heart
2	chr3:100982400-100998800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:100989400-101018600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:100994800-101008800	Weak transcription	Primary T cells from cord blood	blood
5	chr3:100997400-101000600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:100997800-100998800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:100997800-100999200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:100997800-100999200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:100997800-100999200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:100997800-100999400	Enhancers	HMEC	breast
11	chr3:100998000-100998600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr3:100998000-100999000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr3:100998000-100999000	Enhancers	NH-A	brain
14	chr3:100998000-100999200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr3:100998000-100999200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:100998000-100999200	Enhancers	Osteobl	bone
17	chr3:100998000-100999400	Enhancers	HSMM	muscle
18	chr3:100998200-100998800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr3:100998200-100999200	Enhancers	H9 Cell Line	embryonic stem cell
20	chr3:100998200-100999200	Enhancers	HSMMtube	muscle
21	chr3:100998200-100999200	Enhancers	NHEK	skin
22	chr3:100998400-100999200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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