Variant report

Variant	rs61660401
Chromosome Location	chr7:124582547-124582548
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs34065666	0.86[EUR][1000 genomes]
rs34721371	0.86[EUR][1000 genomes]
rs35463079	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55654359	0.86[EUR][1000 genomes]
rs56135137	1.00[EUR][1000 genomes]
rs56403870	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57883866	0.86[EUR][1000 genomes]
rs58372288	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58618031	0.86[AFR][1000 genomes]
rs59044225	0.86[EUR][1000 genomes]
rs59045238	1.00[EUR][1000 genomes]
rs59572327	0.86[EUR][1000 genomes]
rs59653477	0.86[EUR][1000 genomes]
rs59802163	0.86[EUR][1000 genomes]
rs60278737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61126904	1.00[EUR][1000 genomes]
rs61449025	0.81[AFR][1000 genomes]
rs61504594	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66461856	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66480671	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66501705	1.00[EUR][1000 genomes]
rs66528014	0.86[EUR][1000 genomes]
rs66539836	0.86[EUR][1000 genomes]
rs66578146	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66597683	0.81[AFR][1000 genomes]
rs66610287	1.00[EUR][1000 genomes]
rs66639470	0.86[EUR][1000 genomes]
rs66965758	0.86[EUR][1000 genomes]
rs66979057	1.00[EUR][1000 genomes]
rs67166441	0.86[EUR][1000 genomes]
rs67211225	0.81[AFR][1000 genomes]
rs67326132	0.86[EUR][1000 genomes]
rs67476012	1.00[EUR][1000 genomes]
rs67611448	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67652374	0.83[AFR][1000 genomes]
rs67712588	1.00[EUR][1000 genomes]
rs67985498	0.86[EUR][1000 genomes]
rs68016764	1.00[EUR][1000 genomes]
rs68099817	1.00[EUR][1000 genomes]
rs6954402	1.00[EUR][1000 genomes]
rs73223520	1.00[EUR][1000 genomes]
rs73223522	1.00[EUR][1000 genomes]
rs73223548	1.00[EUR][1000 genomes]
rs73225404	0.86[EUR][1000 genomes]
rs73432438	0.83[AFR][1000 genomes]
rs73443852	0.86[EUR][1000 genomes]
rs7801681	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	esv3446198	chr7:124358002-124586856	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv889135	chr7:124462081-124584834	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv889137	chr7:124513770-124584834	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv889138	chr7:124518766-124584834	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv608342	chr7:124549573-124600505	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1016655	chr7:124575684-124684279	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124570200-124585400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:124580800-124585400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr7:124582000-124582800	Enhancers	K562	blood

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