Variant report

Variant	rs66610287
Chromosome Location	chr7:124464637-124464638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs34065666	0.86[EUR][1000 genomes]
rs34721371	0.86[EUR][1000 genomes]
rs35463079	1.00[EUR][1000 genomes]
rs55654359	0.86[EUR][1000 genomes]
rs56135137	1.00[EUR][1000 genomes]
rs56403870	1.00[EUR][1000 genomes]
rs57883866	0.86[EUR][1000 genomes]
rs58302116	1.00[AMR][1000 genomes]
rs58372288	1.00[EUR][1000 genomes]
rs59044225	0.86[EUR][1000 genomes]
rs59045238	1.00[EUR][1000 genomes]
rs59572327	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59653477	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59802163	0.86[EUR][1000 genomes]
rs60278737	1.00[EUR][1000 genomes]
rs60347835	1.00[AMR][1000 genomes]
rs60630082	0.82[AMR][1000 genomes]
rs61126904	1.00[EUR][1000 genomes]
rs61504594	1.00[EUR][1000 genomes]
rs61660401	1.00[EUR][1000 genomes]
rs66461363	0.87[AMR][1000 genomes]
rs66461856	1.00[EUR][1000 genomes]
rs66480671	1.00[EUR][1000 genomes]
rs66501705	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66506561	1.00[AMR][1000 genomes]
rs66528014	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66539836	0.86[EUR][1000 genomes]
rs66578146	1.00[EUR][1000 genomes]
rs66639470	0.86[EUR][1000 genomes]
rs66965758	0.86[EUR][1000 genomes]
rs66979057	1.00[EUR][1000 genomes]
rs67166441	0.86[EUR][1000 genomes]
rs67326132	0.86[EUR][1000 genomes]
rs67476012	1.00[EUR][1000 genomes]
rs67611448	1.00[EUR][1000 genomes]
rs67712588	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67985498	0.86[EUR][1000 genomes]
rs68016764	1.00[EUR][1000 genomes]
rs68099817	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6954402	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73223509	1.00[AMR][1000 genomes]
rs73223520	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73223522	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73223530	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73223548	1.00[EUR][1000 genomes]
rs73225404	0.86[EUR][1000 genomes]
rs73443849	0.93[AMR][1000 genomes]
rs73443852	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7801681	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	esv3446198	chr7:124358002-124586856	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv889134	chr7:124462081-124552802	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv889135	chr7:124462081-124584834	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124450800-124467000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:124451600-124466600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:124452800-124475000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:124454400-124497600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:124454600-124501400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:124457600-124497600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:124459000-124497800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:124459200-124467600	Weak transcription	Esophagus	oesophagus
9	chr7:124459200-124469000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:124459200-124497600	Weak transcription	Pancreas	Pancrea
11	chr7:124459200-124499400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:124459400-124497600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:124459400-124497600	Weak transcription	Brain Anterior Caudate	brain
14	chr7:124460200-124465800	Weak transcription	NH-A	brain
15	chr7:124460200-124466000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr7:124460200-124483400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr7:124460400-124488600	Weak transcription	HSMMtube	muscle
18	chr7:124460600-124486200	Weak transcription	Brain Substantia Nigra	brain
19	chr7:124460800-124476200	Weak transcription	Fetal Brain Male	brain
20	chr7:124461000-124499200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr7:124461000-124499600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr7:124461200-124465800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr7:124461400-124530800	Weak transcription	NHDF-Ad	bronchial
24	chr7:124461600-124466600	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr7:124461600-124466800	Strong transcription	Liver	Liver
26	chr7:124461600-124467200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr7:124461600-124467800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:124461600-124467800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:124461600-124490600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr7:124461600-124493400	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr7:124461600-124499800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr7:124461800-124466600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr7:124461800-124466600	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr7:124462000-124465000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr7:124462000-124465400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr7:124462000-124466800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr7:124462000-124466800	Strong transcription	Adipose Nuclei	Adipose
38	chr7:124462000-124467200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr7:124462200-124466600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr7:124462200-124466600	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr7:124462200-124466800	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr7:124462200-124467800	Strong transcription	Dnd41	blood
43	chr7:124462200-124468000	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr7:124462200-124474600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr7:124462200-124495000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr7:124462200-124498200	Weak transcription	Psoas Muscle	Psoas
47	chr7:124462200-124510200	Weak transcription	Brain Angular Gyrus	brain
48	chr7:124462200-124568200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr7:124462400-124465000	Strong transcription	HSMM	muscle
50	chr7:124462400-124466000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links