Variant report

Variant	rs73443852
Chromosome Location	chr7:124425671-124425672
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:123794726..123796631-chr7:124424906..124425844,7	MCF-7	breast:
2	chr7:123810845..123811716-chr7:124424439..124425838,8	MCF-7	breast:
3	chr7:123792473..123793979-chr7:124425043..124425903,5	MCF-7	breast:
4	chr7:123741026..123741694-chr7:124424950..124425764,2	K562	blood:
5	chr7:123366438..123368497-chr7:124425414..124427516,2	K562	blood:
6	chr7:124405179..124406000-chr7:124424981..124426141,3	MCF-7	breast:
7	chr7:123810410..123811815-chr7:124424995..124425894,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170775	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs34065666	1.00[EUR][1000 genomes]
rs34721371	1.00[EUR][1000 genomes]
rs35463079	0.86[EUR][1000 genomes]
rs55654359	1.00[EUR][1000 genomes]
rs56135137	0.86[EUR][1000 genomes]
rs56403870	0.86[EUR][1000 genomes]
rs57883866	1.00[EUR][1000 genomes]
rs58302116	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58372288	0.86[EUR][1000 genomes]
rs59044225	1.00[EUR][1000 genomes]
rs59045238	0.86[EUR][1000 genomes]
rs59572327	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59653477	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59802163	1.00[EUR][1000 genomes]
rs60046069	0.83[EUR][1000 genomes]
rs60278737	0.86[EUR][1000 genomes]
rs60347835	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60630082	0.82[AMR][1000 genomes]
rs61126904	0.86[EUR][1000 genomes]
rs61504594	0.86[EUR][1000 genomes]
rs61660401	0.86[EUR][1000 genomes]
rs66461363	0.87[AMR][1000 genomes]
rs66461856	0.86[EUR][1000 genomes]
rs66480671	0.86[EUR][1000 genomes]
rs66501705	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66506561	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66528014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66539836	1.00[EUR][1000 genomes]
rs66578146	0.86[EUR][1000 genomes]
rs66610287	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66639470	1.00[EUR][1000 genomes]
rs66965758	1.00[EUR][1000 genomes]
rs66979057	0.86[EUR][1000 genomes]
rs67166441	1.00[EUR][1000 genomes]
rs67326132	1.00[EUR][1000 genomes]
rs67476012	0.86[EUR][1000 genomes]
rs67611448	0.86[EUR][1000 genomes]
rs67712588	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67985498	1.00[EUR][1000 genomes]
rs68016764	0.86[EUR][1000 genomes]
rs68099817	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6954402	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6969610	0.81[AFR][1000 genomes]
rs73223509	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73223520	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73223522	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73223530	1.00[AMR][1000 genomes]
rs73223548	0.86[EUR][1000 genomes]
rs73225404	1.00[EUR][1000 genomes]
rs73443849	0.93[AMR][1000 genomes]
rs7801681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	esv3446198	chr7:124358002-124586856	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124422600-124430800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:124425000-124425800	Enhancers	Brain Substantia Nigra	brain
3	chr7:124425000-124425800	Enhancers	Fetal Lung	lung
4	chr7:124425200-124425800	Enhancers	Fetal Kidney	kidney

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