Variant report

Variant	rs73223509
Chromosome Location	chr7:124436754-124436755
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs58302116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59572327	1.00[AMR][1000 genomes]
rs59653477	1.00[AMR][1000 genomes]
rs60347835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60630082	0.82[AMR][1000 genomes]
rs66461363	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66501705	0.93[AMR][1000 genomes]
rs66506561	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66528014	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs66610287	1.00[AMR][1000 genomes]
rs67712588	0.93[AMR][1000 genomes]
rs68099817	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6954402	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73223520	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73223522	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73223530	1.00[AMR][1000 genomes]
rs73443849	0.93[AMR][1000 genomes]
rs73443852	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7801681	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	esv3446198	chr7:124358002-124586856	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124433600-124442200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:124436400-124437400	Enhancers	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links