Variant report

Variant	rs6954402
Chromosome Location	chr7:124446975-124446976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:124446535..124448384-chr7:124452586..124455044,2	K562	blood:
2	chr7:124444700..124447143-chr7:124448372..124449946,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs34065666	0.86[EUR][1000 genomes]
rs34721371	0.86[EUR][1000 genomes]
rs35463079	1.00[EUR][1000 genomes]
rs55654359	0.86[EUR][1000 genomes]
rs56135137	1.00[EUR][1000 genomes]
rs56403870	1.00[EUR][1000 genomes]
rs57883866	0.86[EUR][1000 genomes]
rs58302116	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs58372288	1.00[EUR][1000 genomes]
rs59044225	0.86[EUR][1000 genomes]
rs59045238	1.00[EUR][1000 genomes]
rs59572327	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59653477	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59802163	0.86[EUR][1000 genomes]
rs60278737	1.00[EUR][1000 genomes]
rs60347835	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs61126904	1.00[EUR][1000 genomes]
rs61504594	1.00[EUR][1000 genomes]
rs61660401	1.00[EUR][1000 genomes]
rs66461363	0.81[AMR][1000 genomes]
rs66461856	1.00[EUR][1000 genomes]
rs66480671	1.00[EUR][1000 genomes]
rs66501705	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66506561	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs66528014	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66539836	0.86[EUR][1000 genomes]
rs66578146	1.00[EUR][1000 genomes]
rs66610287	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66639470	0.86[EUR][1000 genomes]
rs66965758	0.86[EUR][1000 genomes]
rs66979057	1.00[EUR][1000 genomes]
rs67166441	0.86[EUR][1000 genomes]
rs67326132	0.86[EUR][1000 genomes]
rs67476012	1.00[EUR][1000 genomes]
rs67611448	1.00[EUR][1000 genomes]
rs67712588	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67985498	0.86[EUR][1000 genomes]
rs68016764	1.00[EUR][1000 genomes]
rs68099817	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73223509	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73223520	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73223522	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73223530	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73223548	1.00[EUR][1000 genomes]
rs73225404	0.86[EUR][1000 genomes]
rs73443849	0.87[AMR][1000 genomes]
rs73443852	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7801681	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	esv3446198	chr7:124358002-124586856	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124445000-124463800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:124445800-124450000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:124445800-124450200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:124445800-124450200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:124445800-124454400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:124446200-124447000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:124446200-124448200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr7:124446400-124448200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:124446600-124448200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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