Variant report

Variant	rs67611448
Chromosome Location	chr7:124588264-124588265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs34065666	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs34721371	0.86[EUR][1000 genomes]
rs35463079	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55654359	0.86[EUR][1000 genomes]
rs56135137	1.00[EUR][1000 genomes]
rs56403870	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56814856	0.80[AFR][1000 genomes]
rs57883866	0.86[EUR][1000 genomes]
rs58372288	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58618031	0.84[AFR][1000 genomes]
rs59044225	0.86[EUR][1000 genomes]
rs59045238	1.00[EUR][1000 genomes]
rs59572327	0.86[EUR][1000 genomes]
rs59653477	0.86[EUR][1000 genomes]
rs59802163	0.86[EUR][1000 genomes]
rs60278737	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61126904	1.00[EUR][1000 genomes]
rs61449025	0.81[AFR][1000 genomes]
rs61504594	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61660401	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66461856	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66480671	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66501705	1.00[EUR][1000 genomes]
rs66528014	0.86[EUR][1000 genomes]
rs66539836	0.86[EUR][1000 genomes]
rs66578146	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66597683	0.81[AFR][1000 genomes]
rs66610287	1.00[EUR][1000 genomes]
rs66639470	0.86[EUR][1000 genomes]
rs66965758	0.86[EUR][1000 genomes]
rs66979057	1.00[EUR][1000 genomes]
rs67166441	0.86[EUR][1000 genomes]
rs67211225	0.81[AFR][1000 genomes]
rs67326132	0.86[EUR][1000 genomes]
rs67476012	1.00[EUR][1000 genomes]
rs67652374	0.87[AFR][1000 genomes]
rs67712588	1.00[EUR][1000 genomes]
rs67985498	0.86[EUR][1000 genomes]
rs68016764	1.00[EUR][1000 genomes]
rs68099817	1.00[EUR][1000 genomes]
rs6954402	1.00[EUR][1000 genomes]
rs73223520	1.00[EUR][1000 genomes]
rs73223522	1.00[EUR][1000 genomes]
rs73223548	1.00[EUR][1000 genomes]
rs73225404	0.86[EUR][1000 genomes]
rs73432438	0.87[AFR][1000 genomes]
rs73443852	0.86[EUR][1000 genomes]
rs7801681	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv608342	chr7:124549573-124600505	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1016655	chr7:124575684-124684279	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124588200-124588800	Enhancers	Cortex derived primary cultured neurospheres	brain

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