Variant report

Variant	rs59572327
Chromosome Location	chr7:124451088-124451089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs34065666	1.00[EUR][1000 genomes]
rs34721371	1.00[EUR][1000 genomes]
rs35463079	0.86[EUR][1000 genomes]
rs55654359	1.00[EUR][1000 genomes]
rs56135137	0.86[EUR][1000 genomes]
rs56403870	0.86[EUR][1000 genomes]
rs57883866	1.00[EUR][1000 genomes]
rs58302116	1.00[AMR][1000 genomes]
rs58372288	0.86[EUR][1000 genomes]
rs59044225	1.00[EUR][1000 genomes]
rs59045238	0.86[EUR][1000 genomes]
rs59653477	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59802163	1.00[EUR][1000 genomes]
rs60046069	0.83[EUR][1000 genomes]
rs60278737	0.86[EUR][1000 genomes]
rs60347835	1.00[AMR][1000 genomes]
rs60630082	0.82[AMR][1000 genomes]
rs61126904	0.86[EUR][1000 genomes]
rs61504594	0.86[EUR][1000 genomes]
rs61660401	0.86[EUR][1000 genomes]
rs66461363	0.87[AMR][1000 genomes]
rs66461856	0.86[EUR][1000 genomes]
rs66480671	0.86[EUR][1000 genomes]
rs66501705	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66506561	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66528014	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66539836	1.00[EUR][1000 genomes]
rs66578146	0.86[EUR][1000 genomes]
rs66610287	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66639470	1.00[EUR][1000 genomes]
rs66965758	1.00[EUR][1000 genomes]
rs66979057	0.86[EUR][1000 genomes]
rs67166441	1.00[EUR][1000 genomes]
rs67326132	1.00[EUR][1000 genomes]
rs67476012	0.86[EUR][1000 genomes]
rs67611448	0.86[EUR][1000 genomes]
rs67712588	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67985498	1.00[EUR][1000 genomes]
rs68016764	0.86[EUR][1000 genomes]
rs68099817	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6954402	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73223509	1.00[AMR][1000 genomes]
rs73223520	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73223522	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73223530	1.00[AMR][1000 genomes]
rs73223548	0.86[EUR][1000 genomes]
rs73225404	1.00[EUR][1000 genomes]
rs73443849	0.93[AMR][1000 genomes]
rs73443852	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7801681	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	esv3446198	chr7:124358002-124586856	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124445000-124463800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:124445800-124454400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:124450000-124451400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:124450000-124452800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:124450200-124451200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:124450200-124451400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr7:124450200-124451600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr7:124450200-124454600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:124450800-124452800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:124450800-124453400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:124450800-124453400	Weak transcription	Adipose Nuclei	Adipose
12	chr7:124450800-124454200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:124450800-124467000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr7:124451000-124452400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr7:124451000-124452800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:124451000-124454200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr7:124451000-124461800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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