Variant report
| Variant | rs617125 |
|---|---|
| Chromosome Location | chr18:40204589-40204590 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:145382149..145384906-chr18:40203578..40206564,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000201558 | Chromatin interaction |
| ENSG00000233396 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs1789212 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2622327 | 1.00[AMR][1000 genomes] |
| rs480519 | 1.00[AMR][1000 genomes] |
| rs522755 | 1.00[AMR][1000 genomes] |
| rs565932 | 1.00[AMR][1000 genomes] |
| rs604729 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs607455 | 1.00[AMR][1000 genomes] |
| rs624586 | 1.00[AMR][1000 genomes] |
| rs632475 | 1.00[AMR][1000 genomes] |
| rs647925 | 1.00[AMR][1000 genomes] |
| rs670649 | 1.00[AMR][1000 genomes] |
| rs684010 | 1.00[AMR][1000 genomes] |
| rs73951006 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73951755 | 1.00[AMR][1000 genomes] |
| rs73951761 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3447158 | chr18:40045478-40320720 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv833632 | chr18:40187679-40388058 | Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1056794 | chr18:40197837-40688514 | Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:40204000-40206000 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
