Variant report
| Variant | rs607455 |
|---|---|
| Chromosome Location | chr18:40338314-40338315 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs1789212 | 1.00[AMR][1000 genomes] |
| rs1790567 | 1.00[AMR][1000 genomes] |
| rs2622327 | 0.90[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2622328 | 1.00[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs2642798 | 0.93[AFR][1000 genomes] |
| rs474323 | 1.00[AMR][1000 genomes] |
| rs480519 | 0.90[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs483520 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes] |
| rs487851 | 1.00[YRI][hapmap] |
| rs488727 | 0.80[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs495065 | 0.80[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs511729 | 0.89[YRI][hapmap] |
| rs522755 | 1.00[AMR][1000 genomes] |
| rs565932 | 1.00[AMR][1000 genomes] |
| rs601707 | 0.90[YRI][hapmap];0.90[AFR][1000 genomes] |
| rs604729 | 1.00[AMR][1000 genomes] |
| rs612241 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs617125 | 1.00[AMR][1000 genomes] |
| rs618537 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs624586 | 1.00[AMR][1000 genomes] |
| rs632475 | 1.00[AMR][1000 genomes] |
| rs647925 | 1.00[AMR][1000 genomes] |
| rs653863 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs662508 | 0.90[YRI][hapmap] |
| rs663446 | 1.00[AMR][1000 genomes] |
| rs670649 | 0.90[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs674340 | 0.80[YRI][hapmap] |
| rs684010 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs688369 | 0.93[AFR][1000 genomes] |
| rs73486762 | 0.93[AFR][1000 genomes] |
| rs73951006 | 1.00[AMR][1000 genomes] |
| rs73951755 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73951761 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73951766 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833632 | chr18:40187679-40388058 | Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1056794 | chr18:40197837-40688514 | Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:40336400-40342800 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 2 | chr18:40337800-40344600 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
