Variant report

Variant	rs2642798
Chromosome Location	chr18:40359949-40359950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2622327	0.88[AFR][1000 genomes]
rs2622328	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs480519	0.88[AFR][1000 genomes]
rs483520	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs487851	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs488727	0.88[AFR][1000 genomes]
rs601707	0.98[AFR][1000 genomes]
rs607455	0.93[AFR][1000 genomes]
rs612241	0.83[AFR][1000 genomes]
rs618537	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs647925	0.80[AFR][1000 genomes]
rs653863	0.83[AFR][1000 genomes]
rs659129	0.85[AFR][1000 genomes]
rs670649	0.88[AFR][1000 genomes]
rs674340	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs684010	0.85[AFR][1000 genomes]
rs688369	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486762	1.00[AFR][1000 genomes]
rs73951755	0.93[AFR][1000 genomes]
rs73951761	0.88[AFR][1000 genomes]
rs73951766	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40357000-40360800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr18:40357000-40361000	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr18:40357000-40361800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr18:40357400-40360200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr18:40357400-40360800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr18:40357600-40361800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr18:40358200-40360600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr18:40359200-40360200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr18:40359400-40361600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr18:40359600-40360000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr18:40359600-40361400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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