Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2622327	0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs2622328	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2642798	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs480519	0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs487851	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs488727	0.80[YRI][hapmap];0.83[AFR][1000 genomes]
rs495065	0.80[YRI][hapmap]
rs511729	0.89[YRI][hapmap]
rs601707	0.90[YRI][hapmap];0.93[AFR][1000 genomes]
rs607455	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs618537	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs659129	0.81[AFR][1000 genomes]
rs662508	0.90[YRI][hapmap]
rs670649	0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs674340	0.80[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs684010	0.81[AFR][1000 genomes]
rs688369	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486762	0.95[AFR][1000 genomes]
rs73951755	0.88[AFR][1000 genomes]
rs73951761	0.83[AFR][1000 genomes]
rs73951766	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40332800-40335200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr18:40334400-40335400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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