Variant report

Variant	rs684010
Chromosome Location	chr18:40357460-40357461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1789212	1.00[AMR][1000 genomes]
rs1790567	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2622327	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2622328	0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs2642798	0.85[AFR][1000 genomes]
rs474323	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs480519	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs483520	0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs487851	0.89[YRI][hapmap]
rs488727	0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs495065	0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs511729	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[YRI][hapmap]
rs522755	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs565932	1.00[AMR][1000 genomes]
rs601707	0.82[AFR][1000 genomes]
rs604729	1.00[AMR][1000 genomes]
rs607455	0.89[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs612241	0.87[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs617125	1.00[AMR][1000 genomes]
rs618537	0.89[YRI][hapmap]
rs624586	1.00[AMR][1000 genomes]
rs632475	1.00[AMR][1000 genomes]
rs647925	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs653863	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs659129	1.00[ASW][hapmap];0.84[LWK][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes]
rs662508	1.00[YRI][hapmap]
rs663446	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs670649	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs674340	0.88[YRI][hapmap];0.84[AFR][1000 genomes]
rs73486762	0.85[AFR][1000 genomes]
rs73951006	1.00[AMR][1000 genomes]
rs73951755	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73951761	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73951766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40354600-40357600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr18:40357000-40360800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr18:40357000-40361000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr18:40357000-40361800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr18:40357200-40359200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr18:40357200-40359400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr18:40357200-40359600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr18:40357400-40358200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr18:40357400-40358200	Enhancers	Fetal Brain Female	brain
10	chr18:40357400-40358800	Enhancers	H9 Cell Line	embryonic stem cell
11	chr18:40357400-40360200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr18:40357400-40360800	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links