Variant report

Variant	rs647925
Chromosome Location	chr18:40340024-40340025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1789212	1.00[AMR][1000 genomes]
rs1790567	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2622327	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2642798	0.80[AFR][1000 genomes]
rs474323	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs480519	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs488727	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs495065	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs522755	1.00[AMR][1000 genomes]
rs565932	1.00[AMR][1000 genomes]
rs604729	1.00[AMR][1000 genomes]
rs607455	1.00[AMR][1000 genomes]
rs612241	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs617125	1.00[AMR][1000 genomes]
rs624586	1.00[AMR][1000 genomes]
rs632475	1.00[AMR][1000 genomes]
rs653863	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs663446	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs670649	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs684010	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486762	0.80[AFR][1000 genomes]
rs73951006	1.00[AMR][1000 genomes]
rs73951755	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73951761	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73951766	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40336400-40342800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:40337800-40344600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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