Variant report

Variant	rs488727
Chromosome Location	chr18:40431348-40431349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1789212	1.00[AMR][1000 genomes]
rs1790567	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2622327	0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2622328	0.83[AFR][1000 genomes]
rs2642798	0.88[AFR][1000 genomes]
rs474323	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs480519	0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs483520	0.80[YRI][hapmap];0.83[AFR][1000 genomes]
rs487851	0.80[YRI][hapmap]
rs495065	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs511729	0.88[YRI][hapmap]
rs522755	1.00[AMR][1000 genomes]
rs565932	1.00[AMR][1000 genomes]
rs600534	0.82[AFR][1000 genomes]
rs601707	0.89[YRI][hapmap];0.90[AFR][1000 genomes]
rs607455	0.80[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs612241	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs618537	0.80[YRI][hapmap]
rs624586	1.00[AMR][1000 genomes]
rs632475	1.00[AMR][1000 genomes]
rs647925	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs653863	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs659129	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs662508	0.89[YRI][hapmap]
rs663446	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs670649	0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs674340	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs684010	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486762	0.88[AFR][1000 genomes]
rs73951755	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73951761	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73951766	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv2269	chr18:40430930-40475718	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40424800-40434800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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