Variant report

Variant	rs487851
Chromosome Location	chr18:40374173-40374174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2622327	0.90[YRI][hapmap]
rs2622328	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2642798	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs480519	0.90[YRI][hapmap]
rs483520	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs488727	0.80[YRI][hapmap]
rs495065	0.80[YRI][hapmap]
rs511729	0.89[YRI][hapmap]
rs601707	0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs607455	1.00[YRI][hapmap]
rs618537	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs662508	0.90[YRI][hapmap]
rs670649	0.90[YRI][hapmap]
rs674340	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs688369	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486762	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40373400-40374800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr18:40374000-40374200	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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