Variant report

Variant	rs601707
Chromosome Location	chr18:40425504-40425505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2622327	0.85[AFR][1000 genomes]
rs2622328	0.87[YRI][hapmap];0.93[AFR][1000 genomes]
rs2642798	0.98[AFR][1000 genomes]
rs480519	0.85[AFR][1000 genomes]
rs483520	0.90[YRI][hapmap];0.93[AFR][1000 genomes]
rs487851	0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs488727	0.89[YRI][hapmap];0.90[AFR][1000 genomes]
rs495065	0.89[YRI][hapmap]
rs607455	0.90[YRI][hapmap];0.90[AFR][1000 genomes]
rs612241	0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs618537	0.90[YRI][hapmap];0.87[AFR][1000 genomes]
rs653863	0.85[AFR][1000 genomes]
rs659129	0.88[YRI][hapmap];0.87[AFR][1000 genomes]
rs670649	0.85[AFR][1000 genomes]
rs674340	0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs684010	0.82[AFR][1000 genomes]
rs688369	0.89[AFR][1000 genomes]
rs73486762	0.98[AFR][1000 genomes]
rs73951755	0.90[AFR][1000 genomes]
rs73951761	0.85[AFR][1000 genomes]
rs73951766	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3331556	chr18:40424054-40427652	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40424800-40434800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links