Variant report

Variant	rs73951761
Chromosome Location	chr18:40400312-40400313
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1789212	1.00[AMR][1000 genomes]
rs1790567	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2622327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2622328	0.83[AFR][1000 genomes]
rs2642798	0.88[AFR][1000 genomes]
rs474323	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs480519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs483520	0.83[AFR][1000 genomes]
rs488727	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs495065	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs522755	1.00[AMR][1000 genomes]
rs565932	1.00[AMR][1000 genomes]
rs600534	0.82[AFR][1000 genomes]
rs601707	0.85[AFR][1000 genomes]
rs604729	1.00[AMR][1000 genomes]
rs607455	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs612241	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs617125	1.00[AMR][1000 genomes]
rs624586	1.00[AMR][1000 genomes]
rs632475	1.00[AMR][1000 genomes]
rs647925	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs653863	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs659129	0.87[AFR][1000 genomes]
rs663446	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs670649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs674340	0.87[AFR][1000 genomes]
rs684010	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486762	0.88[AFR][1000 genomes]
rs73951006	1.00[AMR][1000 genomes]
rs73951755	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73951766	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40396200-40403000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr18:40396400-40400400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr18:40397000-40401400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr18:40397600-40402000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr18:40397800-40400800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr18:40399400-40401200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr18:40399800-40400800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr18:40399800-40401400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr18:40400000-40401800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr18:40400000-40402400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr18:40400000-40403000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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