Variant report

Variant	rs624586
Chromosome Location	chr18:40298203-40298204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1789212	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1790567	1.00[AMR][1000 genomes]
rs2622327	1.00[AMR][1000 genomes]
rs474323	1.00[AMR][1000 genomes]
rs480519	1.00[AMR][1000 genomes]
rs488727	1.00[AMR][1000 genomes]
rs495065	1.00[AMR][1000 genomes]
rs511729	1.00[ASW][hapmap]
rs522755	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs565932	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs604729	1.00[AMR][1000 genomes]
rs607455	1.00[AMR][1000 genomes]
rs612241	1.00[AMR][1000 genomes]
rs617125	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs632475	1.00[AMR][1000 genomes]
rs647925	1.00[AMR][1000 genomes]
rs653863	1.00[AMR][1000 genomes]
rs659129	1.00[ASW][hapmap]
rs663446	1.00[AMR][1000 genomes]
rs670649	1.00[AMR][1000 genomes]
rs684010	1.00[AMR][1000 genomes]
rs73951006	1.00[AMR][1000 genomes]
rs73951755	1.00[AMR][1000 genomes]
rs73951761	1.00[AMR][1000 genomes]
rs73951766	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40296400-40309800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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