Variant report

Variant	rs663446
Chromosome Location	chr18:40451707-40451708
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1789212	1.00[AMR][1000 genomes]
rs1790567	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2622327	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs474323	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs480519	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs488727	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs495065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs522755	1.00[AMR][1000 genomes]
rs565932	1.00[AMR][1000 genomes]
rs607455	1.00[AMR][1000 genomes]
rs612241	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs624586	1.00[AMR][1000 genomes]
rs632475	1.00[AMR][1000 genomes]
rs647925	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs653863	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs659129	0.92[AFR][1000 genomes]
rs670649	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs674340	0.92[AFR][1000 genomes]
rs684010	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73951755	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73951761	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73951766	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv2269	chr18:40430930-40475718	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv909574	chr18:40440609-40488279	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv909575	chr18:40440609-40493500	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40445400-40468400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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