Variant report

Variant	rs61756942
Chromosome Location	chr4:149318212-149318213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10033040	0.83[ASN][1000 genomes]
rs12711259	0.83[EUR][1000 genomes]
rs13137647	0.83[EUR][1000 genomes]
rs1546044	0.96[EUR][1000 genomes]
rs17024683	0.92[AFR][1000 genomes]
rs17024708	0.83[EUR][1000 genomes]
rs17581975	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2137338	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2358392	0.90[ASN][1000 genomes]
rs2358393	0.91[ASN][1000 genomes]
rs2884444	0.81[ASN][1000 genomes]
rs34818230	0.81[ASN][1000 genomes]
rs4293768	0.91[ASN][1000 genomes]
rs4513547	0.91[ASN][1000 genomes]
rs61756945	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61763774	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61764776	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61764785	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6849903	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6850820	0.83[EUR][1000 genomes]
rs72729957	0.91[ASN][1000 genomes]
rs72729960	0.91[ASN][1000 genomes]
rs72729961	0.91[ASN][1000 genomes]
rs72729962	0.91[ASN][1000 genomes]
rs72729966	0.91[ASN][1000 genomes]
rs72729971	0.83[ASN][1000 genomes]
rs72729972	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72729980	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72729984	0.86[ASN][1000 genomes]
rs72729985	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72732326	0.81[EUR][1000 genomes]
rs73855952	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7691663	0.98[ASN][1000 genomes]
rs7698302	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs907618	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs907620	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307847	0.82[EUR][1000 genomes]
rs9995951	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149297800-149350000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:149299000-149329000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr4:149299200-149318400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr4:149307600-149336600	Weak transcription	Aorta	Aorta
5	chr4:149309400-149320000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:149312800-149338800	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:149313200-149326400	Weak transcription	Fetal Intestine Small	intestine
8	chr4:149315400-149318800	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr4:149315800-149326400	Weak transcription	Right Ventricle	heart
10	chr4:149316800-149320600	Enhancers	Fetal Heart	heart
11	chr4:149317200-149319200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr4:149317400-149318400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr4:149317800-149321400	Enhancers	Colon Smooth Muscle	Colon
14	chr4:149318000-149318600	Enhancers	Fetal Lung	lung
15	chr4:149318000-149319200	Enhancers	Liver	Liver
16	chr4:149318200-149318400	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr4:149318200-149318600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr4:149318200-149318600	Enhancers	Primary T cells fromperipheralblood	blood
19	chr4:149318200-149318600	Enhancers	Colonic Mucosa	Colon
20	chr4:149318200-149318600	Enhancers	Fetal Muscle Trunk	muscle
21	chr4:149318200-149318600	Enhancers	Gastric	stomach
22	chr4:149318200-149318600	Enhancers	Right Atrium	heart
23	chr4:149318200-149318600	Enhancers	Stomach Smooth Muscle	stomach
24	chr4:149318200-149318800	Enhancers	Duodenum Mucosa	Duodenum
25	chr4:149318200-149319200	Enhancers	Fetal Muscle Leg	muscle
26	chr4:149318200-149319200	Enhancers	Fetal Stomach	stomach
27	chr4:149318200-149319200	Enhancers	Left Ventricle	heart
28	chr4:149318200-149319200	Enhancers	Lung	lung
29	chr4:149318200-149319200	Enhancers	Pancreas	Pancrea
30	chr4:149318200-149319200	Enhancers	Psoas Muscle	Psoas
31	chr4:149318200-149319200	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr4:149318200-149319200	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr4:149318200-149319200	Enhancers	Small Intestine	intestine
34	chr4:149318200-149319400	Enhancers	Ovary	ovary
35	chr4:149318200-149320400	Enhancers	Stomach Mucosa	stomach

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