Variant report

Variant	rs7698302
Chromosome Location	chr4:149301975-149301976
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:149300581..149303429-chr4:149304550..149306545,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10033040	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10034789	0.81[CHB][hapmap]
rs10519959	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs12711259	0.82[CHB][hapmap];0.93[EUR][1000 genomes]
rs13137647	0.93[EUR][1000 genomes]
rs1512343	0.83[CHB][hapmap]
rs1546044	0.81[EUR][1000 genomes]
rs17024708	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17484601	0.83[CHB][hapmap]
rs17484671	0.81[CEU][hapmap];0.83[CHB][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17581815	0.83[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17581975	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2137338	0.84[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2358392	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2358393	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2884444	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34818230	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4293768	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4513547	1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4835136	0.81[CHB][hapmap];0.80[ASN][1000 genomes]
rs61756942	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61756945	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61763774	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61764776	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61764785	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6849903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6850820	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs72729957	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72729960	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72729961	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72729962	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72729966	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72729971	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72729972	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72729980	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72729984	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72729985	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72732326	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73855952	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7691663	0.83[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7700126	0.84[CHB][hapmap];0.80[ASN][1000 genomes]
rs907618	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs907620	0.81[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9307847	0.94[EUR][1000 genomes]
rs9995951	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv880246	chr4:149287807-149311728	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv980434	chr4:149300843-149308003	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149277000-149306800	Weak transcription	Pancreas	Pancrea
2	chr4:149292200-149315000	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:149297600-149304600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr4:149297800-149306000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:149297800-149306000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr4:149297800-149306000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr4:149297800-149350000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:149298400-149311600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:149299000-149306000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr4:149299000-149306800	Weak transcription	Psoas Muscle	Psoas
11	chr4:149299000-149329000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr4:149299200-149306200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr4:149299200-149307000	Weak transcription	Ovary	ovary
14	chr4:149299200-149318400	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr4:149299800-149307200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:149300600-149310000	Weak transcription	Left Ventricle	heart
17	chr4:149301200-149302000	Enhancers	Fetal Heart	heart
18	chr4:149301400-149302000	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links