Variant report

Variant	rs17484671
Chromosome Location	chr4:149268136-149268137
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10033040	0.84[CHD][hapmap];0.87[ASN][1000 genomes]
rs10034789	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10519959	0.83[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12711259	0.82[EUR][1000 genomes]
rs13137647	0.82[EUR][1000 genomes]
rs1512337	0.89[ASN][1000 genomes]
rs1512343	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17024708	0.83[CHB][hapmap];0.86[GIH][hapmap];0.84[EUR][1000 genomes]
rs17484601	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17484622	0.90[ASN][1000 genomes]
rs17581815	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17581975	0.83[CHB][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2358392	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2358393	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28612659	0.90[ASN][1000 genomes]
rs2884444	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34818230	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4293768	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4513547	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4835136	0.81[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4835515	1.00[ASN][1000 genomes]
rs56221684	0.90[ASN][1000 genomes]
rs61756945	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61763774	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61764776	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61764785	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67632846	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6849903	0.83[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.85[EUR][1000 genomes]
rs6850820	0.82[EUR][1000 genomes]
rs72729957	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72729960	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72729961	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72729962	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72729966	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72729971	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72729972	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72729984	0.84[AMR][1000 genomes]
rs72729985	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72732326	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73855952	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7658039	0.87[ASN][1000 genomes]
rs7698302	0.81[CEU][hapmap];0.83[CHB][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7700126	0.83[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs907618	0.83[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9307847	0.83[EUR][1000 genomes]
rs9992528	0.96[ASN][1000 genomes]
rs9995951	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1019350	chr4:149232430-149282117	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3584816	chr4:149254670-149293317	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149249400-149271200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr4:149266000-149268200	Enhancers	Fetal Heart	heart
3	chr4:149266000-149276400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr4:149266800-149268200	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr4:149266800-149268200	Enhancers	Small Intestine	intestine
6	chr4:149267000-149268200	Enhancers	Left Ventricle	heart
7	chr4:149267000-149268200	Enhancers	Right Atrium	heart
8	chr4:149267000-149280600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr4:149267200-149269400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:149267200-149276800	Weak transcription	Colonic Mucosa	Colon
11	chr4:149267400-149268200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr4:149267400-149268200	Enhancers	Ovary	ovary
13	chr4:149267400-149276800	Weak transcription	Liver	Liver
14	chr4:149267600-149268600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr4:149267600-149269800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr4:149267600-149272800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr4:149267600-149276600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr4:149267600-149276600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr4:149267800-149271400	Weak transcription	Psoas Muscle	Psoas
20	chr4:149267800-149282000	Weak transcription	Right Ventricle	heart
21	chr4:149268000-149268200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr4:149268000-149268200	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr4:149268000-149268200	Enhancers	Stomach Mucosa	stomach

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