Variant report

Variant	rs10033040
Chromosome Location	chr4:149282928-149282929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10034789	0.92[CEU][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10519959	0.89[CEU][hapmap];0.92[CHB][hapmap];0.84[CHD][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1512343	0.84[CHD][hapmap]
rs17024708	1.00[JPT][hapmap]
rs17484671	0.84[CHD][hapmap];0.87[ASN][1000 genomes]
rs17581815	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17581975	1.00[JPT][hapmap]
rs2137338	0.82[GIH][hapmap];1.00[JPT][hapmap]
rs2358392	0.86[ASN][1000 genomes]
rs2358393	0.84[ASN][1000 genomes]
rs4293768	0.84[ASN][1000 genomes]
rs4513547	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs4835136	0.89[CEU][hapmap];0.91[CHB][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4835515	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61756942	0.83[ASN][1000 genomes]
rs61763774	0.81[ASN][1000 genomes]
rs6849903	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs72729957	0.84[ASN][1000 genomes]
rs72729960	0.84[ASN][1000 genomes]
rs72729961	0.84[ASN][1000 genomes]
rs72729962	0.84[ASN][1000 genomes]
rs72729966	0.84[ASN][1000 genomes]
rs72729980	0.83[ASN][1000 genomes]
rs7691663	0.88[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7698302	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7700126	0.88[CEU][hapmap];0.92[CHB][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs907618	1.00[JPT][hapmap]
rs907620	0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9992528	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3584816	chr4:149254670-149293317	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149268200-149288000	Weak transcription	Small Intestine	intestine
2	chr4:149277000-149291000	Weak transcription	Left Ventricle	heart
3	chr4:149277000-149296800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:149277000-149306800	Weak transcription	Pancreas	Pancrea
5	chr4:149277200-149283800	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:149280200-149283000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr4:149281200-149300800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:149281400-149290800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr4:149282200-149287800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr4:149282200-149289000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr4:149282200-149289000	Weak transcription	Gastric	stomach
12	chr4:149282400-149287800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr4:149282600-149283000	Enhancers	Fetal Heart	heart
14	chr4:149282600-149283000	Enhancers	Fetal Intestine Large	intestine
15	chr4:149282600-149283000	Enhancers	Fetal Intestine Small	intestine
16	chr4:149282600-149283000	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr4:149282600-149283200	Enhancers	Right Atrium	heart
18	chr4:149282800-149283000	Enhancers	Adipose Nuclei	Adipose
19	chr4:149282800-149284000	Weak transcription	Right Ventricle	heart
20	chr4:149282800-149287800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr4:149282800-149289200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr4:149282800-149296800	Weak transcription	Psoas Muscle	Psoas

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