Variant report

Variant	rs61763774
Chromosome Location	chr4:149298304-149298305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10033040	0.81[ASN][1000 genomes]
rs10519959	0.80[ASN][1000 genomes]
rs12711259	0.97[EUR][1000 genomes]
rs13137647	0.97[EUR][1000 genomes]
rs1546044	0.82[EUR][1000 genomes]
rs17024708	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17484671	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17581815	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17581975	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2137338	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2358392	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2358393	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2884444	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34818230	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4293768	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4513547	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4835136	0.80[ASN][1000 genomes]
rs61756942	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61756945	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61764776	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61764785	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6849903	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6850820	0.97[EUR][1000 genomes]
rs72729957	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72729960	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72729961	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72729962	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72729966	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72729971	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72729972	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72729980	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72729984	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72729985	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72732326	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73855952	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7691663	0.96[ASN][1000 genomes]
rs7698302	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7700126	0.80[ASN][1000 genomes]
rs907618	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs907620	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9307847	0.95[EUR][1000 genomes]
rs9995951	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv880246	chr4:149287807-149311728	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149277000-149306800	Weak transcription	Pancreas	Pancrea
2	chr4:149281200-149300800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:149283000-149299000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:149292200-149298600	Weak transcription	Left Ventricle	heart
5	chr4:149292200-149315000	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:149296800-149298600	Enhancers	HepG2	liver
7	chr4:149296800-149299600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr4:149297000-149299200	Enhancers	Fetal Heart	heart
9	chr4:149297600-149298400	Weak transcription	Psoas Muscle	Psoas
10	chr4:149297600-149298600	Weak transcription	Ovary	ovary
11	chr4:149297600-149298800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr4:149297600-149299000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr4:149297600-149299000	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr4:149297600-149300600	Weak transcription	Brain Hippocampus Middle	brain
15	chr4:149297600-149304600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr4:149297800-149298400	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr4:149297800-149298600	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr4:149297800-149298600	Enhancers	HUVEC	blood vessel
19	chr4:149297800-149298800	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr4:149297800-149299000	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr4:149297800-149299000	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr4:149297800-149299000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr4:149297800-149299200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr4:149297800-149299200	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr4:149297800-149301400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr4:149297800-149306000	Weak transcription	Rectal Smooth Muscle	rectum
27	chr4:149297800-149306000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr4:149297800-149306000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr4:149297800-149350000	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr4:149298000-149301400	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr4:149298200-149299000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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