Variant report

Variant	rs12711259
Chromosome Location	chr4:149321621-149321622
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs13137647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1546044	0.84[EUR][1000 genomes]
rs17024708	0.81[CEU][hapmap];0.82[CHB][hapmap];0.94[EUR][1000 genomes]
rs17484671	0.82[EUR][1000 genomes]
rs17581815	0.84[EUR][1000 genomes]
rs17581975	0.82[CEU][hapmap];0.82[CHB][hapmap];0.96[EUR][1000 genomes]
rs1913023	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs2137338	0.82[CHB][hapmap]
rs2358392	0.89[EUR][1000 genomes]
rs2358393	0.88[EUR][1000 genomes]
rs2884444	0.84[EUR][1000 genomes]
rs34818230	0.88[EUR][1000 genomes]
rs4293768	0.89[EUR][1000 genomes]
rs4513547	0.89[EUR][1000 genomes]
rs61756942	0.83[EUR][1000 genomes]
rs61756945	0.97[EUR][1000 genomes]
rs61763774	0.97[EUR][1000 genomes]
rs61764776	0.97[EUR][1000 genomes]
rs61764785	0.97[EUR][1000 genomes]
rs6849903	0.82[CHB][hapmap];0.97[EUR][1000 genomes]
rs6850820	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72729957	0.89[EUR][1000 genomes]
rs72729960	0.89[EUR][1000 genomes]
rs72729961	0.86[EUR][1000 genomes]
rs72729962	0.89[EUR][1000 genomes]
rs72729966	0.89[EUR][1000 genomes]
rs72729971	0.88[EUR][1000 genomes]
rs72729972	0.94[EUR][1000 genomes]
rs72729980	0.83[EUR][1000 genomes]
rs72729984	0.81[EUR][1000 genomes]
rs72729985	0.97[EUR][1000 genomes]
rs72732326	0.91[EUR][1000 genomes]
rs73855952	0.94[EUR][1000 genomes]
rs7698302	0.82[CHB][hapmap];0.93[EUR][1000 genomes]
rs907618	0.82[CHB][hapmap];0.97[EUR][1000 genomes]
rs907620	0.82[EUR][1000 genomes]
rs9307847	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9995951	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149297800-149350000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:149299000-149329000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr4:149307600-149336600	Weak transcription	Aorta	Aorta
4	chr4:149312800-149338800	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:149313200-149326400	Weak transcription	Fetal Intestine Small	intestine
6	chr4:149315800-149326400	Weak transcription	Right Ventricle	heart
7	chr4:149318600-149326400	Weak transcription	Right Atrium	heart
8	chr4:149318600-149327400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:149318800-149346600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:149319000-149339000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr4:149319200-149326400	Weak transcription	Left Ventricle	heart
12	chr4:149319200-149326400	Weak transcription	Psoas Muscle	Psoas
13	chr4:149319200-149327200	Weak transcription	Fetal Stomach	stomach
14	chr4:149319200-149335000	Weak transcription	Esophagus	oesophagus
15	chr4:149319200-149339200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:149319400-149326400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr4:149319400-149334600	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr4:149320400-149326200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr4:149320400-149351800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr4:149321000-149326200	Weak transcription	Stomach Mucosa	stomach
21	chr4:149321200-149326400	Weak transcription	Fetal Heart	heart
22	chr4:149321400-149328000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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