Variant report

Variant	rs72729961
Chromosome Location	chr4:149286720-149286721
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10033040	0.84[ASN][1000 genomes]
rs10034789	0.82[ASN][1000 genomes]
rs10519959	0.84[ASN][1000 genomes]
rs12711259	0.86[EUR][1000 genomes]
rs13137647	0.86[EUR][1000 genomes]
rs17024708	0.88[EUR][1000 genomes]
rs17484671	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17581815	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17581975	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2137338	0.87[ASN][1000 genomes]
rs2358392	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2358393	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2884444	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34818230	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4293768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4513547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4835136	0.84[ASN][1000 genomes]
rs4835515	0.82[ASN][1000 genomes]
rs61756942	0.91[ASN][1000 genomes]
rs61756945	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61763774	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61764776	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61764785	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67632846	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6849903	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6850820	0.86[EUR][1000 genomes]
rs72729957	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72729960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72729962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72729966	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72729971	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72729972	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72729980	0.91[ASN][1000 genomes]
rs72729984	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72729985	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72732326	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73855952	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7691663	0.93[ASN][1000 genomes]
rs7698302	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7700126	0.84[ASN][1000 genomes]
rs907618	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs907620	0.91[ASN][1000 genomes]
rs9307847	0.87[EUR][1000 genomes]
rs9995951	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3584816	chr4:149254670-149293317	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149268200-149288000	Weak transcription	Small Intestine	intestine
2	chr4:149277000-149291000	Weak transcription	Left Ventricle	heart
3	chr4:149277000-149296800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:149277000-149306800	Weak transcription	Pancreas	Pancrea
5	chr4:149281200-149300800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:149281400-149290800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr4:149282200-149287800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr4:149282200-149289000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr4:149282200-149289000	Weak transcription	Gastric	stomach
10	chr4:149282400-149287800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:149282800-149287800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr4:149282800-149289200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr4:149282800-149296800	Weak transcription	Psoas Muscle	Psoas
14	chr4:149283000-149287800	Weak transcription	Fetal Heart	heart
15	chr4:149283000-149289000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr4:149283000-149299000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr4:149283200-149293400	Weak transcription	Right Atrium	heart
18	chr4:149284200-149288000	Weak transcription	Colon Smooth Muscle	Colon

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