Variant report

Variant	rs17581815
Chromosome Location	chr4:149280048-149280049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10033040	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10034789	0.81[CHB][hapmap];0.90[ASN][1000 genomes]
rs10519959	1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[ASN][1000 genomes]
rs12711259	0.84[EUR][1000 genomes]
rs13137647	0.84[EUR][1000 genomes]
rs1512343	0.83[CHB][hapmap];0.95[CHD][hapmap];0.81[ASN][1000 genomes]
rs17024708	0.83[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs17484601	0.83[CHB][hapmap]
rs17484622	0.81[ASN][1000 genomes]
rs17484671	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17581975	0.83[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2137338	1.00[JPT][hapmap]
rs2358392	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2358393	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28612659	0.81[ASN][1000 genomes]
rs2884444	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34818230	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4293768	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4513547	0.85[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4835136	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs4835515	0.90[ASN][1000 genomes]
rs56221684	0.81[ASN][1000 genomes]
rs61756945	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61763774	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61764776	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61764785	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67632846	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6849903	0.83[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6850820	0.84[EUR][1000 genomes]
rs72729957	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72729960	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72729961	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72729962	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72729966	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72729971	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72729972	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72729984	0.88[AMR][1000 genomes]
rs72729985	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72732326	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73855952	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7691663	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7698302	0.83[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7700126	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs907618	0.83[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs907620	1.00[JPT][hapmap]
rs9307847	0.85[EUR][1000 genomes]
rs9992528	0.87[ASN][1000 genomes]
rs9995951	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1019350	chr4:149232430-149282117	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3584816	chr4:149254670-149293317	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149267000-149280600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:149267800-149282000	Weak transcription	Right Ventricle	heart
3	chr4:149268200-149288000	Weak transcription	Small Intestine	intestine
4	chr4:149272000-149280400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr4:149272000-149282000	Weak transcription	Psoas Muscle	Psoas
6	chr4:149277000-149282600	Weak transcription	Right Atrium	heart
7	chr4:149277000-149291000	Weak transcription	Left Ventricle	heart
8	chr4:149277000-149296800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:149277000-149306800	Weak transcription	Pancreas	Pancrea
10	chr4:149277200-149280800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr4:149277200-149280800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr4:149277200-149280800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr4:149277200-149280800	Weak transcription	Adipose Nuclei	Adipose
14	chr4:149277200-149281000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr4:149277200-149282000	Weak transcription	Gastric	stomach
16	chr4:149277200-149283800	Weak transcription	Colon Smooth Muscle	Colon
17	chr4:149277600-149282000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr4:149277800-149280400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr4:149278000-149280200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr4:149278000-149280800	Weak transcription	HUVEC	blood vessel
21	chr4:149278200-149280200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr4:149278200-149280200	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr4:149278200-149280400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr4:149278200-149280400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr4:149278400-149280600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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