Variant report
| Variant | rs62337486 |
|---|---|
| Chromosome Location | chr4:144229912-144229913 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000200049 | TF binding region |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs2323011 | 0.89[EUR][1000 genomes] |
| rs28989215 | 0.89[EUR][1000 genomes] |
| rs28989221 | 0.89[EUR][1000 genomes] |
| rs28989224 | 0.89[EUR][1000 genomes] |
| rs28989225 | 0.89[EUR][1000 genomes] |
| rs28989230 | 0.89[EUR][1000 genomes] |
| rs62337489 | 0.93[EUR][1000 genomes] |
| rs62337511 | 0.93[EUR][1000 genomes] |
| rs62337512 | 0.83[EUR][1000 genomes] |
| rs62337513 | 0.93[EUR][1000 genomes] |
| rs62337514 | 0.93[EUR][1000 genomes] |
| rs62337515 | 0.89[EUR][1000 genomes] |
| rs62337516 | 0.89[EUR][1000 genomes] |
| rs62337517 | 0.89[EUR][1000 genomes] |
| rs62337518 | 0.89[EUR][1000 genomes] |
| rs62337519 | 0.89[EUR][1000 genomes] |
| rs62337524 | 0.89[EUR][1000 genomes] |
| rs62337525 | 0.89[EUR][1000 genomes] |
| rs62337526 | 0.89[EUR][1000 genomes] |
| rs62337527 | 0.89[EUR][1000 genomes] |
| rs62337528 | 0.89[EUR][1000 genomes] |
| rs62337529 | 0.89[EUR][1000 genomes] |
| rs62337530 | 0.89[EUR][1000 genomes] |
| rs62337531 | 0.89[EUR][1000 genomes] |
| rs62337532 | 0.89[EUR][1000 genomes] |
| rs6828635 | 0.89[EUR][1000 genomes] |
| rs745164 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1033902 | chr4:144114413-144285772 | Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:144229400-144231200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
