Variant report

Variant	rs62337528
Chromosome Location	chr4:144313176-144313177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17017745	0.95[AFR][1000 genomes]
rs2323011	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28925882	1.00[AFR][1000 genomes]
rs28925887	1.00[AFR][1000 genomes]
rs28989215	1.00[EUR][1000 genomes]
rs28989221	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28989224	1.00[EUR][1000 genomes]
rs28989225	1.00[EUR][1000 genomes]
rs28989230	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62337486	0.89[EUR][1000 genomes]
rs62337489	0.89[EUR][1000 genomes]
rs62337511	0.89[EUR][1000 genomes]
rs62337512	0.80[EUR][1000 genomes]
rs62337513	0.89[EUR][1000 genomes]
rs62337514	0.89[EUR][1000 genomes]
rs62337515	1.00[EUR][1000 genomes]
rs62337516	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62337517	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62337518	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62337519	1.00[EUR][1000 genomes]
rs62337524	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62337525	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62337526	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62337527	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62337529	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62337530	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62337531	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62337532	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6828635	1.00[EUR][1000 genomes]
rs745164	0.89[EUR][1000 genomes]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144303000-144318000	Weak transcription	HSMM	muscle
2	chr4:144303200-144317800	Weak transcription	Gastric	stomach
3	chr4:144303400-144326600	Weak transcription	Colonic Mucosa	Colon
4	chr4:144304200-144320000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr4:144304600-144317000	Weak transcription	K562	blood
6	chr4:144306600-144318000	Weak transcription	Aorta	Aorta
7	chr4:144307400-144323600	Enhancers	Brain Hippocampus Middle	brain
8	chr4:144308000-144313400	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr4:144308000-144316400	Enhancers	Brain Substantia Nigra	brain
10	chr4:144308200-144313800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:144308600-144315400	Enhancers	Fetal Lung	lung
12	chr4:144308800-144319400	Enhancers	Brain Cingulate Gyrus	brain
13	chr4:144309200-144317000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:144309200-144327600	Weak transcription	Esophagus	oesophagus
15	chr4:144309400-144313200	Enhancers	Fetal Heart	heart
16	chr4:144309800-144316200	Enhancers	Brain Anterior Caudate	brain
17	chr4:144310000-144314800	Enhancers	NHDF-Ad	bronchial
18	chr4:144310000-144315600	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr4:144310000-144316000	Enhancers	NHLF	lung
20	chr4:144310000-144316200	Enhancers	Rectal Smooth Muscle	rectum
21	chr4:144310200-144313200	Enhancers	Liver	Liver
22	chr4:144310200-144313400	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr4:144310200-144315600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:144310200-144315600	Enhancers	Colon Smooth Muscle	Colon
25	chr4:144310200-144317000	Weak transcription	Left Ventricle	heart
26	chr4:144310200-144325600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr4:144310400-144315200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr4:144310600-144313400	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr4:144310600-144314600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr4:144310800-144317600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr4:144311000-144313200	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr4:144311000-144313400	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr4:144311200-144320400	Weak transcription	Stomach Mucosa	stomach
34	chr4:144311400-144313200	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr4:144311400-144313400	Enhancers	Primary hematopoietic stem cells	blood
36	chr4:144311400-144320000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr4:144311600-144313200	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr4:144311600-144321600	Enhancers	Brain Angular Gyrus	brain
39	chr4:144311800-144313800	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr4:144311800-144314400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr4:144312000-144313200	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr4:144312000-144313400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr4:144312000-144313400	Enhancers	Fetal Brain Female	brain
44	chr4:144312000-144313800	Enhancers	Stomach Smooth Muscle	stomach
45	chr4:144312200-144317000	Weak transcription	Right Atrium	heart
46	chr4:144312200-144317000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr4:144312200-144317200	Weak transcription	Pancreas	Pancrea
48	chr4:144312200-144321000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr4:144312400-144313600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr4:144312400-144319000	Weak transcription	Rectal Mucosa Donor 31	rectum

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