Variant report

Variant	rs62337526
Chromosome Location	chr4:144305459-144305460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:144294005..144295749-chr4:144303829..144305469,2	K562	blood:
2	chr4:144296543..144298998-chr4:144305325..144308009,2	K562	blood:
3	chr4:144300243..144304529-chr4:144305070..144308118,4	K562	blood:

Variant related genes	Relation type
ENSG00000109458	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17017745	0.83[AFR][1000 genomes]
rs2323011	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28925882	0.87[AFR][1000 genomes]
rs28925887	0.87[AFR][1000 genomes]
rs28989215	1.00[EUR][1000 genomes]
rs28989221	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28989224	1.00[EUR][1000 genomes]
rs28989225	1.00[EUR][1000 genomes]
rs28989230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62337486	0.89[EUR][1000 genomes]
rs62337489	0.89[EUR][1000 genomes]
rs62337511	0.89[EUR][1000 genomes]
rs62337512	0.80[EUR][1000 genomes]
rs62337513	0.89[EUR][1000 genomes]
rs62337514	0.89[EUR][1000 genomes]
rs62337515	1.00[EUR][1000 genomes]
rs62337516	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62337517	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62337518	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62337519	1.00[EUR][1000 genomes]
rs62337524	1.00[EUR][1000 genomes]
rs62337525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62337527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62337528	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62337529	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62337530	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62337531	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62337532	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6828635	1.00[EUR][1000 genomes]
rs745164	0.89[EUR][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144297200-144305600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:144298000-144305800	Enhancers	Fetal Stomach	stomach
3	chr4:144300200-144307000	Enhancers	Colon Smooth Muscle	Colon
4	chr4:144301600-144307800	Enhancers	Primary B cells from peripheral blood	blood
5	chr4:144301800-144306000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr4:144302000-144305800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr4:144302200-144307000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:144302200-144307000	Enhancers	NHDF-Ad	bronchial
9	chr4:144302600-144305600	Weak transcription	Esophagus	oesophagus
10	chr4:144302600-144305600	Weak transcription	Spleen	Spleen
11	chr4:144302800-144305600	Weak transcription	Left Ventricle	heart
12	chr4:144302800-144308000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr4:144302800-144312600	Weak transcription	Placenta	Placenta
14	chr4:144303000-144305600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr4:144303000-144312000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr4:144303000-144318000	Weak transcription	HSMM	muscle
17	chr4:144303200-144305600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr4:144303200-144305600	Weak transcription	Pancreas	Pancrea
19	chr4:144303200-144308200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:144303200-144311800	Weak transcription	Brain Germinal Matrix	brain
21	chr4:144303200-144312000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr4:144303200-144317800	Weak transcription	Gastric	stomach
23	chr4:144303400-144308600	Weak transcription	HepG2	liver
24	chr4:144303400-144312000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr4:144303400-144312600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr4:144303400-144326600	Weak transcription	Colonic Mucosa	Colon
27	chr4:144303800-144307200	Enhancers	Fetal Lung	lung
28	chr4:144303800-144308600	Weak transcription	Fetal Brain Female	brain
29	chr4:144304000-144305800	Weak transcription	Aorta	Aorta
30	chr4:144304000-144305800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr4:144304000-144307600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr4:144304000-144307800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr4:144304000-144308600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr4:144304000-144310200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr4:144304000-144310600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr4:144304000-144310600	Weak transcription	Hela-S3	cervix
37	chr4:144304200-144305600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr4:144304200-144305800	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr4:144304200-144306600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:144304200-144306800	Enhancers	Primary B cells from cord blood	blood
41	chr4:144304200-144307200	Enhancers	Brain Cingulate Gyrus	brain
42	chr4:144304200-144308400	Weak transcription	Stomach Mucosa	stomach
43	chr4:144304200-144320000	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr4:144304400-144305600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr4:144304400-144305600	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr4:144304400-144305600	Weak transcription	Osteobl	bone
47	chr4:144304400-144305800	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr4:144304400-144306200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr4:144304400-144306600	Weak transcription	Fetal Kidney	kidney
50	chr4:144304400-144307800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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