Variant report

Variant	rs62337530
Chromosome Location	chr4:144315938-144315939
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144315927..144318308-chr4:144352192..144353716,2	K562	blood:
2	chr4:144105239..144107122-chr4:144315713..144318669,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170185	Chromatin interaction
ENSG00000250326	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17017745	0.95[AFR][1000 genomes]
rs2323011	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28925882	1.00[AFR][1000 genomes]
rs28925887	1.00[AFR][1000 genomes]
rs28989215	1.00[EUR][1000 genomes]
rs28989221	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28989224	1.00[EUR][1000 genomes]
rs28989225	1.00[EUR][1000 genomes]
rs28989230	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62337486	0.89[EUR][1000 genomes]
rs62337489	0.89[EUR][1000 genomes]
rs62337511	0.89[EUR][1000 genomes]
rs62337512	0.80[EUR][1000 genomes]
rs62337513	0.89[EUR][1000 genomes]
rs62337514	0.89[EUR][1000 genomes]
rs62337515	1.00[EUR][1000 genomes]
rs62337516	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62337517	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62337518	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62337519	1.00[EUR][1000 genomes]
rs62337524	1.00[EUR][1000 genomes]
rs62337525	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62337526	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62337527	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62337528	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62337529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62337531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62337532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6828635	1.00[EUR][1000 genomes]
rs745164	0.89[EUR][1000 genomes]

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144303000-144318000	Weak transcription	HSMM	muscle
2	chr4:144303200-144317800	Weak transcription	Gastric	stomach
3	chr4:144303400-144326600	Weak transcription	Colonic Mucosa	Colon
4	chr4:144304200-144320000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr4:144304600-144317000	Weak transcription	K562	blood
6	chr4:144306600-144318000	Weak transcription	Aorta	Aorta
7	chr4:144307400-144323600	Enhancers	Brain Hippocampus Middle	brain
8	chr4:144308000-144316400	Enhancers	Brain Substantia Nigra	brain
9	chr4:144308800-144319400	Enhancers	Brain Cingulate Gyrus	brain
10	chr4:144309200-144317000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:144309200-144327600	Weak transcription	Esophagus	oesophagus
12	chr4:144309800-144316200	Enhancers	Brain Anterior Caudate	brain
13	chr4:144310000-144316000	Enhancers	NHLF	lung
14	chr4:144310000-144316200	Enhancers	Rectal Smooth Muscle	rectum
15	chr4:144310200-144317000	Weak transcription	Left Ventricle	heart
16	chr4:144310200-144325600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:144310800-144317600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr4:144311200-144320400	Weak transcription	Stomach Mucosa	stomach
19	chr4:144311400-144320000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:144311600-144321600	Enhancers	Brain Angular Gyrus	brain
21	chr4:144312200-144317000	Weak transcription	Right Atrium	heart
22	chr4:144312200-144317000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr4:144312200-144317200	Weak transcription	Pancreas	Pancrea
24	chr4:144312200-144321000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr4:144312400-144319000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr4:144312400-144323600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr4:144312600-144316000	Weak transcription	Adipose Nuclei	Adipose
28	chr4:144312600-144323800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr4:144312600-144326400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr4:144312600-144328600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr4:144312800-144317000	Weak transcription	Fetal Intestine Large	intestine
32	chr4:144312800-144317600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr4:144312800-144317600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr4:144312800-144324000	Weak transcription	Fetal Intestine Small	intestine
35	chr4:144312800-144331400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr4:144312800-144336800	Weak transcription	Fetal Muscle Trunk	muscle
37	chr4:144313000-144319200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr4:144313000-144320200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr4:144313000-144323800	Weak transcription	Fetal Muscle Leg	muscle
40	chr4:144313200-144318000	Weak transcription	NH-A	brain
41	chr4:144313200-144319000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr4:144313200-144319200	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr4:144313200-144320400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr4:144313400-144320400	Weak transcription	Duodenum Mucosa	Duodenum
45	chr4:144313400-144323000	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr4:144313400-144323400	Weak transcription	Fetal Brain Female	brain
47	chr4:144313400-144323600	Weak transcription	Primary hematopoietic stem cells	blood
48	chr4:144313400-144324000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr4:144313600-144317600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr4:144313600-144319600	Enhancers	Skeletal Muscle Male	skeletal muscle

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