Variant report

Variant	rs28989230
Chromosome Location	chr4:144309141-144309142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:144307947..144309781-chr4:144310910..144313103,2	K562	blood:
2	chr4:144308580..144312274-chr4:144317112..144320354,4	K562	blood:
3	chr4:144257977..144259931-chr4:144307446..144310304,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178972	Chromatin interaction
ENSG00000109458	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17017745	0.83[AFR][1000 genomes]
rs2323011	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28925882	0.87[AFR][1000 genomes]
rs28925887	0.87[AFR][1000 genomes]
rs28989215	1.00[EUR][1000 genomes]
rs28989221	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28989224	1.00[EUR][1000 genomes]
rs28989225	1.00[EUR][1000 genomes]
rs62337486	0.89[EUR][1000 genomes]
rs62337489	0.89[EUR][1000 genomes]
rs62337511	0.89[EUR][1000 genomes]
rs62337512	0.80[EUR][1000 genomes]
rs62337513	0.89[EUR][1000 genomes]
rs62337514	0.89[EUR][1000 genomes]
rs62337515	1.00[EUR][1000 genomes]
rs62337516	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62337517	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62337518	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62337519	1.00[EUR][1000 genomes]
rs62337524	1.00[EUR][1000 genomes]
rs62337525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62337526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62337527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62337528	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62337529	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62337530	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62337531	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62337532	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6828635	1.00[EUR][1000 genomes]
rs745164	0.89[EUR][1000 genomes]

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144302800-144312600	Weak transcription	Placenta	Placenta
2	chr4:144303000-144312000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:144303000-144318000	Weak transcription	HSMM	muscle
4	chr4:144303200-144311800	Weak transcription	Brain Germinal Matrix	brain
5	chr4:144303200-144312000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:144303200-144317800	Weak transcription	Gastric	stomach
7	chr4:144303400-144312000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr4:144303400-144312600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:144303400-144326600	Weak transcription	Colonic Mucosa	Colon
10	chr4:144304000-144310200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:144304000-144310600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr4:144304000-144310600	Weak transcription	Hela-S3	cervix
13	chr4:144304200-144320000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr4:144304400-144309600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:144304400-144312000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:144304600-144310000	Weak transcription	HMEC	breast
17	chr4:144304600-144310000	Weak transcription	NHEK	skin
18	chr4:144304600-144311200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:144304600-144312600	Weak transcription	HSMMtube	muscle
20	chr4:144304600-144317000	Weak transcription	K562	blood
21	chr4:144305200-144310200	Weak transcription	Liver	Liver
22	chr4:144305200-144311000	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr4:144305200-144311800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr4:144305200-144311800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:144305600-144309400	Enhancers	Brain Anterior Caudate	brain
26	chr4:144305800-144310600	Weak transcription	Fetal Stomach	stomach
27	chr4:144306000-144310000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr4:144306000-144312000	Weak transcription	Fetal Muscle Trunk	muscle
29	chr4:144306000-144312000	Weak transcription	Fetal Muscle Leg	muscle
30	chr4:144306000-144312000	Weak transcription	Pancreas	Pancrea
31	chr4:144306200-144310200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr4:144306200-144311000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr4:144306200-144311200	Enhancers	Brain Angular Gyrus	brain
34	chr4:144306400-144310000	Weak transcription	Osteobl	bone
35	chr4:144306600-144310400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr4:144306600-144310400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr4:144306600-144310600	Weak transcription	Adipose Nuclei	Adipose
38	chr4:144306600-144312000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr4:144306600-144318000	Weak transcription	Aorta	Aorta
40	chr4:144306800-144310000	Weak transcription	Fetal Kidney	kidney
41	chr4:144306800-144310000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr4:144306800-144310000	Weak transcription	NHLF	lung
43	chr4:144306800-144310200	Enhancers	Left Ventricle	heart
44	chr4:144306800-144310400	Weak transcription	Stomach Smooth Muscle	stomach
45	chr4:144306800-144310600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr4:144307000-144310000	Weak transcription	NHDF-Ad	bronchial
47	chr4:144307000-144310200	Weak transcription	Colon Smooth Muscle	Colon
48	chr4:144307000-144311800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr4:144307200-144310200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr4:144307200-144310600	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links