Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1444651	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56144112	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62373330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62373333	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62373334	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62373335	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62373353	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62373356	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62373357	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62373358	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62373359	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62374660	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62374662	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62374665	0.89[AMR][1000 genomes]
rs62374666	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72781173	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72781177	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72781179	0.87[EUR][1000 genomes]
rs72781189	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs751656	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1034696	chr5:124616571-124654771	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3361600	chr5:124626989-124628140	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
4	nsv823206	chr5:124627008-124628142	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124614400-124631400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:124622400-124628600	Weak transcription	Fetal Brain Male	brain
3	chr5:124627400-124628800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:124627600-124628600	Weak transcription	Fetal Brain Female	brain
5	chr5:124627600-124629200	Enhancers	Primary B cells from peripheral blood	blood
6	chr5:124627800-124633800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:124628000-124629800	Enhancers	Dnd41	blood

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